Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017681A_C01 KMC017681A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD59413.1| SMC6 protein [Oryza sativa] 33 2.0
gb|EAA05747.1| agCP10296 [Anopheles gambiae str. PEST] 33 2.0
gb|EAA40793.1| GLP_29_25364_22848 [Giardia lamblia ATCC 50803] 33 2.7
ref|NP_178048.1| hypothetical protein; protein id: At1g79280.1 [... 32 5.9
gb|AAN60264.1| unknown [Arabidopsis thaliana] 32 5.9
>emb|CAD59413.1| SMC6 protein [Oryza sativa]
Length = 1040
Score = 33.1 bits (74), Expect = 2.0
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -1
Query: 481 NRSSAKDHDECHIEEQNLQVISNIYTRLKDEPRKRIESAVTRSPWTTYQR 332
+ SS ++D+C I+++ + SN+ TRLK+E R E A + W T+ R
Sbjct: 356 DESSKAENDKCEIQKEINSLHSNV-TRLKEEERGLHEKAKSGRVWVTHIR 404
>gb|EAA05747.1| agCP10296 [Anopheles gambiae str. PEST]
Length = 261
Score = 33.1 bits (74), Expect = 2.0
Identities = 20/43 (46%), Positives = 22/43 (50%), Gaps = 3/43 (6%)
Frame = +2
Query: 305 FNLLALVAS---PLICSPR*SSYCTFYALSWFILKTCVYVGYY 424
FNL VA+ P +CSP S LS I T VYVGYY
Sbjct: 31 FNLFVYVAALLIPKVCSPYPDSEAIIRGLSELIFFTNVYVGYY 73
>gb|EAA40793.1| GLP_29_25364_22848 [Giardia lamblia ATCC 50803]
Length = 838
Score = 32.7 bits (73), Expect = 2.7
Identities = 21/73 (28%), Positives = 39/73 (52%), Gaps = 2/73 (2%)
Frame = -3
Query: 350 LDYISEETQQGQGG*SWKLVTVFVKFFIEENVLSRKS--LLINGVTLMYYVDAPSMVVLL 177
L+ + +E +G K + V +++ +EN+ + L+ NGV + + V A + + L
Sbjct: 495 LENLEQEDGKGMNSNELKELLVCIEYIHKENMTVKMGEYLVANGVKVYHQVVARAKLKPL 554
Query: 176 CPLRIGVLILFMC 138
L IG+L+L MC
Sbjct: 555 DKLEIGLLLLSMC 567
>ref|NP_178048.1| hypothetical protein; protein id: At1g79280.1 [Arabidopsis thaliana]
Length = 2111
Score = 31.6 bits (70), Expect = 5.9
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -1
Query: 472 SAKDHDECHIEEQNLQVISNIYTRLKDEPRKRIESAVTRSPWTTYQRRRNKGKEVKAGN 296
S K+ +E +E+ +Q++ +LKDE RK+ E + T +R K E + G+
Sbjct: 1509 SVKEREE---KEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGD 1564
>gb|AAN60264.1| unknown [Arabidopsis thaliana]
Length = 148
Score = 31.6 bits (70), Expect = 5.9
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -1
Query: 472 SAKDHDECHIEEQNLQVISNIYTRLKDEPRKRIESAVTRSPWTTYQRRRNKGKEVKAGN 296
S K+ +E +E+ +Q++ +LKDE RK+ E + T +R K E + G+
Sbjct: 81 SVKEREE---KEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGD 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,569,147
Number of Sequences: 1393205
Number of extensions: 8313232
Number of successful extensions: 17369
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17355
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
