Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017513A_C01 KMC017513A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11407.1| glycolate oxidase subunit D-like; D-lactate dehy... 100 2e-20
ref|NP_568170.1| glycolate oxidase subunit D-like; D-lactate deh... 100 2e-20
emb|CAD54138.1| Hypothetical protein F32D8.12 [Caenorhabditis el... 79 3e-14
pir||A89201 protein F32D8.4 [imported] - Caenorhabditis elegans 79 3e-14
ref|NP_505775.1| Lactate dehydrogenase [Caenorhabditis elegans] ... 79 3e-14
>dbj|BAB11407.1| glycolate oxidase subunit D-like; D-lactate dehydrogenase-like
[Arabidopsis thaliana]
Length = 418
Score = 100 bits (248), Expect = 2e-20
Identities = 44/56 (78%), Positives = 52/56 (92%)
Frame = -3
Query: 588 ALEGTCTGXHGVGTGKMKYLEEELGEEALRTMKKIKAALDPHNIMNPGKLIPPHVC 421
+++GTCTG HGVGTGKMKYLE+ELG EAL+TMK+IK LDP++IMNPGKLIPPHVC
Sbjct: 362 SMDGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKTLDPNDIMNPGKLIPPHVC 417
>ref|NP_568170.1| glycolate oxidase subunit D-like; D-lactate dehydrogenase-like;
protein id: At5g06580.1, supported by cDNA: gi_15010679
[Arabidopsis thaliana] gi|15010680|gb|AAK73999.1|
AT5g06580/F15M7_11 [Arabidopsis thaliana]
Length = 567
Score = 100 bits (248), Expect = 2e-20
Identities = 44/56 (78%), Positives = 52/56 (92%)
Frame = -3
Query: 588 ALEGTCTGXHGVGTGKMKYLEEELGEEALRTMKKIKAALDPHNIMNPGKLIPPHVC 421
+++GTCTG HGVGTGKMKYLE+ELG EAL+TMK+IK LDP++IMNPGKLIPPHVC
Sbjct: 511 SMDGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKTLDPNDIMNPGKLIPPHVC 566
>emb|CAD54138.1| Hypothetical protein F32D8.12 [Caenorhabditis elegans]
Length = 474
Score = 79.3 bits (194), Expect = 3e-14
Identities = 35/52 (67%), Positives = 41/52 (78%)
Frame = -3
Query: 588 ALEGTCTGXHGVGTGKMKYLEEELGEEALRTMKKIKAALDPHNIMNPGKLIP 433
A +GTCTG HG+G GK KYL EELGE +R M IK ALDP+NIMNPGK++P
Sbjct: 421 AADGTCTGEHGIGLGKRKYLREELGENTVRLMHTIKHALDPNNIMNPGKVLP 472
>pir||A89201 protein F32D8.4 [imported] - Caenorhabditis elegans
Length = 870
Score = 79.3 bits (194), Expect = 3e-14
Identities = 35/52 (67%), Positives = 41/52 (78%)
Frame = -3
Query: 588 ALEGTCTGXHGVGTGKMKYLEEELGEEALRTMKKIKAALDPHNIMNPGKLIP 433
A +GTCTG HG+G GK KYL EELGE +R M IK ALDP+NIMNPGK++P
Sbjct: 817 AADGTCTGEHGIGLGKRKYLREELGENTVRLMHTIKHALDPNNIMNPGKVLP 868
>ref|NP_505775.1| Lactate dehydrogenase [Caenorhabditis elegans] gi|7500345|pir||T21659
hypothetical protein F32D8.4 - Caenorhabditis elegans
Length = 912
Score = 79.3 bits (194), Expect = 3e-14
Identities = 35/52 (67%), Positives = 41/52 (78%)
Frame = -3
Query: 588 ALEGTCTGXHGVGTGKMKYLEEELGEEALRTMKKIKAALDPHNIMNPGKLIP 433
A +GTCTG HG+G GK KYL EELGE +R M IK ALDP+NIMNPGK++P
Sbjct: 859 AADGTCTGEHGIGLGKRKYLREELGENTVRLMHTIKHALDPNNIMNPGKVLP 910
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,789,155
Number of Sequences: 1393205
Number of extensions: 8713519
Number of successful extensions: 19476
Number of sequences better than 10.0: 271
Number of HSP's better than 10.0 without gapping: 19021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19444
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
