Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017510A_C01 KMC017510A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702571.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.3
ref|NP_704525.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.1
ref|NP_039769.1| ORF2' [Methanothermobacter thermautotrophicus] ... 32 6.6
ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTE... 32 8.6
ref|NP_066529.1| ribosomal protein S11 [Naegleria gruberi] gi|10... 32 8.6
>ref|NP_702571.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497757|gb|AAN37295.1|AE014827_38 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 306
Score = 33.5 bits (75), Expect = 2.3
Identities = 10/40 (25%), Positives = 26/40 (65%)
Frame = -3
Query: 303 SNVVLSVFPCSSWCFVQNGMYIRVMFFLDVGGSYVHFIFH 184
S+++L++FPC W F +++ ++ FL + ++ +I++
Sbjct: 188 SSIILTIFPCVFWIFCDTAIFLFLLIFLFIMSLFLLYIYN 227
>ref|NP_704525.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499264|emb|CAD51344.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1868
Score = 32.3 bits (72), Expect = 5.1
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 61 NNRNLRSSNISKFFGLTLLNYKQQNYKTQLQEIT*YIHP*IMKNKMDVGASYV---KEKH 231
NN+N +S ++K F L LLN N K ++Q I NK D + V K K
Sbjct: 1587 NNKNCATSEMTKTFNLDLLNTTSSNQKNEIQHI---------NNKGDKHITNVFMRKTKS 1637
Query: 232 NPNIH 246
N NI+
Sbjct: 1638 NNNIN 1642
>ref|NP_039769.1| ORF2' [Methanothermobacter thermautotrophicus]
gi|267539|sp|P29572|YPZ2_METTF HYPOTHETICAL 33.1 KD
PROTEIN (ORF2') gi|282617|pir||S26451 hypothetical
protein 2' - Methanobacterium thermoformicicum plasmid
pFZ1 gi|44649|emb|CAA48441.1| ORF2' [Methanothermobacter
thermautotrophicus]
Length = 284
Score = 32.0 bits (71), Expect = 6.6
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = -3
Query: 303 SNVVLSVFPCSSWCFVQNGM----YIRVMFFLDVGGSYV 199
SNV+ +P WCF + + V FFLD+GGS V
Sbjct: 124 SNVISKRWPSGDWCFFPDETGSVDWEEVAFFLDIGGSKV 162
>ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
gi|20984895|ref|XP_136007.1| similar to X INACTIVE
SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
Length = 172
Score = 31.6 bits (70), Expect = 8.6
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = -1
Query: 299 MLCYLYFLVQVGVLYKMACIFGLCFSLT*EAPTSILFFII*GCIYQVIS*S*VL*FCCL* 120
+LCY+YF + + V + +A LC+ ++F + C+ C
Sbjct: 74 ILCYIYFFLALCVYFFLALCLILCY----------IYFFLALCV------------CLPC 111
Query: 119 FKSVSPKNLDILL-DLRFLLFYLVISLALGCFYF 21
F S+S L ++L + F L ++ +S L C YF
Sbjct: 112 FVSISSLQLCLILCYIYFFLAFVCLSFLLLCVYF 145
>ref|NP_066529.1| ribosomal protein S11 [Naegleria gruberi]
gi|10444241|gb|AAG17807.1|AF288092_32 ribosomal protein
S11 [Naegleria gruberi]
Length = 593
Score = 31.6 bits (70), Expect = 8.6
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 405 LSCWKL-SSFFRQIHIVLLNSYKIAILWLHLLKGRHVIIVSMYGSLLLMLLHIHHPSLXL 581
LS KL +SFF +++ LLN+Y +A + L I + +Y SLL L H L
Sbjct: 283 LSYLKLKNSFFFKLYSKLLNNYNVAFIRLDKANNIFSIYIEIYNSLLSFLKKKHSALLSK 342
Query: 582 SWKVEGS 602
K S
Sbjct: 343 KKKKSSS 349
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,395,042
Number of Sequences: 1393205
Number of extensions: 10361644
Number of successful extensions: 20059
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20056
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
