Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017500A_C01 KMC017500A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20832.1| contains ESTs C74558(E31852),AU094839(E31852)~pu... 122 2e-27
ref|NP_194275.1| ABC transporter family protein; protein id: At4... 114 7e-25
gb|AAM19838.1| At4g25450/M7J2_180 [Arabidopsis thaliana] 114 7e-25
emb|CAA08835.1| ABC transporter protein; P-glycoprotein [Gallus ... 82 5e-15
gb|AAD23956.1|AF099732_1 multidrug resistance transporter homolo... 82 6e-15
>dbj|BAC20832.1| contains ESTs C74558(E31852),AU094839(E31852)~putative ATP-binding
cassette, sub-family B, member 10, mitochondrial
precursor [Oryza sativa (japonica cultivar-group)]
Length = 687
Score = 122 bits (307), Expect = 2e-27
Identities = 61/73 (83%), Positives = 68/73 (92%)
Frame = -3
Query: 569 DTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAEQGTHFELLAKKGQ 390
DT SERLVQ+ALNHLMKGRT+LVIAHRLSTVQNA+QIA+CSDG+IAE GTH EL+A G+
Sbjct: 615 DTTSERLVQEALNHLMKGRTSLVIAHRLSTVQNAHQIAVCSDGKIAELGTHAELVASGGR 674
Query: 389 YASLVGTQRLAFE 351
YASLVGTQRLAFE
Sbjct: 675 YASLVGTQRLAFE 687
>ref|NP_194275.1| ABC transporter family protein; protein id: At4g25450.1
[Arabidopsis thaliana] gi|7486813|pir||T05802
hypothetical protein M7J2.180 - Arabidopsis thaliana
gi|2980805|emb|CAA18181.1| putative protein [Arabidopsis
thaliana] gi|7269395|emb|CAB81355.1| putative protein
[Arabidopsis thaliana]
Length = 280
Score = 114 bits (286), Expect = 7e-25
Identities = 59/73 (80%), Positives = 64/73 (86%)
Frame = -3
Query: 569 DTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAEQGTHFELLAKKGQ 390
D VSERLVQ ALN LMK RTTLVIAHRLSTVQ+A QIA+CSDG+I E GTH EL+A+KG
Sbjct: 208 DAVSERLVQSALNRLMKDRTTLVIAHRLSTVQSANQIAVCSDGKIIELGTHSELVAQKGS 267
Query: 389 YASLVGTQRLAFE 351
YASLVGTQRLAFE
Sbjct: 268 YASLVGTQRLAFE 280
>gb|AAM19838.1| At4g25450/M7J2_180 [Arabidopsis thaliana]
Length = 714
Score = 114 bits (286), Expect = 7e-25
Identities = 59/73 (80%), Positives = 64/73 (86%)
Frame = -3
Query: 569 DTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAEQGTHFELLAKKGQ 390
D VSERLVQ ALN LMK RTTLVIAHRLSTVQ+A QIA+CSDG+I E GTH EL+A+KG
Sbjct: 642 DAVSERLVQSALNRLMKDRTTLVIAHRLSTVQSANQIAVCSDGKIIELGTHSELVAQKGS 701
Query: 389 YASLVGTQRLAFE 351
YASLVGTQRLAFE
Sbjct: 702 YASLVGTQRLAFE 714
>emb|CAA08835.1| ABC transporter protein; P-glycoprotein [Gallus gallus]
Length = 1288
Score = 82.0 bits (201), Expect = 5e-15
Identities = 40/68 (58%), Positives = 54/68 (78%)
Frame = -3
Query: 569 DTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAEQGTHFELLAKKGQ 390
DT SE++VQ+AL+ +GRT +VIAHRLST+QNA +IA+ +G++ EQGTH +LLA+KG
Sbjct: 1215 DTESEKIVQEALDKAREGRTCIVIAHRLSTIQNADKIAVIQNGKVIEQGTHQQLLAEKGF 1274
Query: 389 YASLVGTQ 366
Y SLV Q
Sbjct: 1275 YYSLVNVQ 1282
Score = 72.8 bits (177), Expect = 3e-12
Identities = 39/73 (53%), Positives = 49/73 (66%)
Frame = -3
Query: 569 DTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAEQGTHFELLAKKGQ 390
DT SE +VQ AL+ +GRTT+V+AHRLSTV+NA IA+ G I EQG H +L+ KKG
Sbjct: 570 DTESESVVQAALDKAREGRTTVVVAHRLSTVRNADLIAVFESGVITEQGNHSQLIEKKGI 629
Query: 389 YASLVGTQRLAFE 351
Y LV Q + E
Sbjct: 630 YYKLVNMQTIETE 642
>gb|AAD23956.1|AF099732_1 multidrug resistance transporter homolog [Fundulus heteroclitus]
Length = 851
Score = 81.6 bits (200), Expect = 6e-15
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = -3
Query: 569 DTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAEQGTHFELLAKKGQ 390
DT SE++VQDAL+ KGRT +V+AHRLST++NA +IA+ G + EQGTH +LLAKKG
Sbjct: 778 DTESEKVVQDALDQASKGRTCIVVAHRLSTIRNADRIAVFQGGVVVEQGTHQQLLAKKGV 837
Query: 389 YASLVGTQ 366
Y LV TQ
Sbjct: 838 YHMLVTTQ 845
Score = 68.2 bits (165), Expect = 7e-11
Identities = 35/68 (51%), Positives = 47/68 (68%)
Frame = -3
Query: 569 DTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAEQGTHFELLAKKGQ 390
D SE +VQ AL+ + +GRTTL++AH LST++NA IA G++ E GTH EL+ KKG
Sbjct: 129 DAESETIVQAALDKVRQGRTTLIVAHCLSTIRNADVIAGLEKGKVVELGTHSELMEKKGV 188
Query: 389 YASLVGTQ 366
Y +LV Q
Sbjct: 189 YHTLVTMQ 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,722,436
Number of Sequences: 1393205
Number of extensions: 9793136
Number of successful extensions: 20994
Number of sequences better than 10.0: 1750
Number of HSP's better than 10.0 without gapping: 20320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20984
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
