Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017456A_C01 KMC017456A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM08784.1|AC016780_14 Putative epimerase/dehydratase [Oryza ... 283 6e-76
ref|NP_198236.1| epimerase/dehydratase - like protein; protein i... 278 2e-74
emb|CAD62190.1| Ata17 protein [Saccharothrix mutabilis subsp. ca... 120 1e-26
gb|ZP_00050097.1| hypothetical protein [Magnetospirillum magneto... 107 6e-23
gb|AAG02361.1|AF210249_20 sugar epimerase BlmG [Streptomyces ver... 88 5e-17
>gb|AAM08784.1|AC016780_14 Putative epimerase/dehydratase [Oryza sativa]
Length = 378
Score = 283 bits (725), Expect = 6e-76
Identities = 137/151 (90%), Positives = 139/151 (91%), Gaps = 1/151 (0%)
Frame = +1
Query: 49 MGSSGAEAD-YGAYTYKELEREPYWPSEKLRISITGAGGFIASHIARRLKSEGHYIIASD 225
MGSS YG YTY ELERE YWPSEKLRISITGAGGFI SHIARRLKSEGHYIIASD
Sbjct: 1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASD 60
Query: 226 WKTNEHMTEDMFCHEFHLIDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYN 405
WK NEHMTEDMFCHEFHL+DLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYN
Sbjct: 61 WKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYN 120
Query: 406 NTMISFNMIEAGRINGVKRFFYASSACIYPE 498
NTMISFNM+EA RINGVKRFFYASSACIYPE
Sbjct: 121 NTMISFNMLEAARINGVKRFFYASSACIYPE 151
>ref|NP_198236.1| epimerase/dehydratase - like protein; protein id: At5g28840.1,
supported by cDNA: gi_16323112, supported by cDNA:
gi_16323179 [Arabidopsis thaliana]
gi|16323113|gb|AAL15291.1| AT5g28840/F7P1_20
[Arabidopsis thaliana] gi|16323180|gb|AAL15324.1|
AT5g28840/F7P1_20 [Arabidopsis thaliana]
gi|21436019|gb|AAM51587.1| AT5g28840/F7P1_20
[Arabidopsis thaliana]
Length = 377
Score = 278 bits (712), Expect = 2e-74
Identities = 132/150 (88%), Positives = 139/150 (92%)
Frame = +1
Query: 49 MGSSGAEADYGAYTYKELEREPYWPSEKLRISITGAGGFIASHIARRLKSEGHYIIASDW 228
MG++ DYGAYTYKELERE YWPSE L+ISITGAGGFIASHIARRLK EGHY+IASDW
Sbjct: 1 MGTTNG-TDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDW 59
Query: 229 KTNEHMTEDMFCHEFHLIDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNN 408
K NEHMTEDMFC EFHL+DLRVM+NCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYNN
Sbjct: 60 KKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNN 119
Query: 409 TMISFNMIEAGRINGVKRFFYASSACIYPE 498
TMISFNMIEA RING+KRFFYASSACIYPE
Sbjct: 120 TMISFNMIEAARINGIKRFFYASSACIYPE 149
>emb|CAD62190.1| Ata17 protein [Saccharothrix mutabilis subsp. capreolus]
Length = 384
Score = 120 bits (300), Expect = 1e-26
Identities = 67/155 (43%), Positives = 90/155 (57%), Gaps = 1/155 (0%)
Frame = +1
Query: 34 SHFLRMGSSGAEADY-GAYTYKELEREPYWPSEKLRISITGAGGFIASHIARRLKSEGHY 210
+H R+G A A+ ++R P K R +TGAGGFI H+ L+ +G++
Sbjct: 16 THVRRVGERPASRRRESAHVGHHVDRMESMPPGKKRALVTGAGGFIGHHLVSYLRRQGYW 75
Query: 211 IIASDWKTNEHMTEDMFCHEFHLIDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHS 390
+ +D + E + EF L DLR KV GVD V++LAADMGGMGFI +NH+
Sbjct: 76 VRGADLRHPEFRPTE--ADEFVLADLREPGVAEKVVEGVDEVYSLAADMGGMGFISANHA 133
Query: 391 VIMYNNTMISFNMIEAGRINGVKRFFYASSACIYP 495
IM NN++I N +EA R V RFFYASSAC+YP
Sbjct: 134 TIMKNNSLIDLNTLEAARKARVNRFFYASSACVYP 168
>gb|ZP_00050097.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 154
Score = 107 bits (268), Expect = 6e-23
Identities = 53/118 (44%), Positives = 75/118 (62%)
Frame = +1
Query: 145 ITGAGGFIASHIARRLKSEGHYIIASDWKTNEHMTEDMFCHEFHLIDLRVMDNCLKVTNG 324
+TGAGGFI H+ L+ G+++ D K + D EF L DLR ++C + G
Sbjct: 9 VTGAGGFIGGHLVTYLRRHGYHVRGVDLKHPDFGPSD--ADEFVLADLRSFEDCREAVKG 66
Query: 325 VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAGRINGVKRFFYASSACIYPE 498
VD V+NLAADMGG+G+I H+ I +NNTMIS M++A V+RF ++SSAC+YP+
Sbjct: 67 VDEVYNLAADMGGIGYISGAHASITFNNTMISAQMLKAAFDAKVERFLFSSSACVYPQ 124
>gb|AAG02361.1|AF210249_20 sugar epimerase BlmG [Streptomyces verticillus]
Length = 325
Score = 88.2 bits (217), Expect = 5e-17
Identities = 48/117 (41%), Positives = 68/117 (58%)
Frame = +1
Query: 145 ITGAGGFIASHIARRLKSEGHYIIASDWKTNEHMTEDMFCHEFHLIDLRVMDNCLKVTNG 324
+TGAGGFI SH+ RRL +GH + D + + EF + DLR + G
Sbjct: 6 VTGAGGFIGSHLVRRLVRDGHRVRGVDLVPPRYGPGE--AQEFVIADLRDAAQAARAVAG 63
Query: 325 VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAGRINGVKRFFYASSACIYP 495
D VF LAA+MGG+G+ + + I+++N +IS + IEA R GV+ Y SSAC+YP
Sbjct: 64 ADSVFALAANMGGIGWTHTAPAEILHDNLLISTHTIEACRAAGVRTTVYTSSACVYP 120
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,715,919
Number of Sequences: 1393205
Number of extensions: 8855251
Number of successful extensions: 29201
Number of sequences better than 10.0: 700
Number of HSP's better than 10.0 without gapping: 28235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28982
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
