Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017451A_C01 KMC017451A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK30204.1|AF349963_1 endoxyloglucan transferase [Daucus carota] 216 1e-55
ref|NP_172925.1| xyloglucan endotransglycosylase (XTR2); protein... 206 1e-52
gb|AAD45125.1|AF163821_1 endoxyloglucan transferase [Arabidopsis... 206 2e-52
gb|AAM63050.1| putative xyloglucan-specific glucanase [Arabidops... 206 2e-52
ref|NP_178294.1| xyloglucan endotransglycosylase (EXGT-A3); prot... 206 2e-52
>gb|AAK30204.1|AF349963_1 endoxyloglucan transferase [Daucus carota]
Length = 330
Score = 216 bits (551), Expect = 1e-55
Identities = 104/132 (78%), Positives = 117/132 (87%)
Frame = +2
Query: 185 LLLFCSMLSVLASGSSRNLPIMAFDEGYTPLFGDNNLVIHSDGKLVHLSLDERTGSGFVS 364
L + CS++ VLA GSSRNLPI++F+EGY+ LFGD+NL+I DGK HLSLDERTGSGFVS
Sbjct: 8 LFVMCSVV-VLAHGSSRNLPIVSFEEGYSQLFGDSNLMILQDGKSAHLSLDERTGSGFVS 66
Query: 365 HDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMFQNNHDEIDFEFLGNIRGKDWRIQTN 544
HDLY HG+FSASIKLPADYTAGVVVAFYMSN DMF NHDEIDFEFLGNIRGK+WR+QTN
Sbjct: 67 HDLYKHGFFSASIKLPADYTAGVVVAFYMSNVDMFAKNHDEIDFEFLGNIRGKEWRLQTN 126
Query: 545 IYGNGSTSIGRE 580
+YGNGST GRE
Sbjct: 127 VYGNGSTGAGRE 138
>ref|NP_172925.1| xyloglucan endotransglycosylase (XTR2); protein id: At1g14720.1,
supported by cDNA: 19079., supported by cDNA:
gi_1244755, supported by cDNA: gi_14326520, supported by
cDNA: gi_2154610 [Arabidopsis thaliana]
gi|2129770|pir||S71224 xyloglucan
endo-1,4-beta-D-glucanase (EC 3.2.1.-) XTR-2 -
Arabidopsis thaliana gi|1244756|gb|AAB18366.1|
xyloglucan endotransglycosylase-related protein
gi|2154611|dbj|BAA20290.1| endoxyloglucan transferase
related protein [Arabidopsis thaliana]
gi|5533311|gb|AAD45124.1|AF163820_1 endoxyloglucan
transferase [Arabidopsis thaliana]
gi|8778237|gb|AAF79246.1|AC006917_31 F10B6.12
[Arabidopsis thaliana]
gi|14326521|gb|AAK60305.1|AF385714_1 At1g14720/F10B6_29
[Arabidopsis thaliana] gi|21553987|gb|AAM63068.1|
xyloglucan endo-transglycosylase, putative [Arabidopsis
thaliana]
Length = 332
Score = 206 bits (525), Expect = 1e-52
Identities = 94/132 (71%), Positives = 117/132 (88%), Gaps = 1/132 (0%)
Frame = +2
Query: 188 LLFCSMLSVLASGSS-RNLPIMAFDEGYTPLFGDNNLVIHSDGKLVHLSLDERTGSGFVS 364
L+F S+ + L SG + + LP++ FDEGYT LFGD NL++H DGK V L+LDERTGSGFVS
Sbjct: 8 LVFMSLFTSLVSGFALQKLPLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVS 67
Query: 365 HDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMFQNNHDEIDFEFLGNIRGKDWRIQTN 544
+D+YLHG+FS+SIKLPADY+AGVV+AFY+SNGD+++ NHDEIDFEFLGNIRG++WRIQTN
Sbjct: 68 NDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTN 127
Query: 545 IYGNGSTSIGRE 580
IYGNGST +GRE
Sbjct: 128 IYGNGSTHLGRE 139
>gb|AAD45125.1|AF163821_1 endoxyloglucan transferase [Arabidopsis thaliana]
Length = 333
Score = 206 bits (524), Expect = 2e-52
Identities = 99/133 (74%), Positives = 114/133 (85%), Gaps = 1/133 (0%)
Frame = +2
Query: 185 LLLFCSMLSVLASGSS-RNLPIMAFDEGYTPLFGDNNLVIHSDGKLVHLSLDERTGSGFV 361
LL+F S+ S L SG + +NLPI +F+E YT LFGD NL +H DGK V L+LDERTGSGFV
Sbjct: 7 LLVFMSLFSGLVSGFALQNLPITSFEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFV 66
Query: 362 SHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMFQNNHDEIDFEFLGNIRGKDWRIQT 541
S+D YLHG+FSASIKLP+DYTAGVVVAFYMSNGDM++ NHDEIDFEFLGNIR K+WR+QT
Sbjct: 67 SNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQT 126
Query: 542 NIYGNGSTSIGRE 580
NIYGNGST GRE
Sbjct: 127 NIYGNGSTHSGRE 139
>gb|AAM63050.1| putative xyloglucan-specific glucanase [Arabidopsis thaliana]
Length = 333
Score = 206 bits (524), Expect = 2e-52
Identities = 99/133 (74%), Positives = 114/133 (85%), Gaps = 1/133 (0%)
Frame = +2
Query: 185 LLLFCSMLSVLASGSS-RNLPIMAFDEGYTPLFGDNNLVIHSDGKLVHLSLDERTGSGFV 361
LL+F S+ S L SG + +NLPI +F+E YT LFGD NL +H DGK V L+LDERTGSGFV
Sbjct: 7 LLVFMSLFSGLVSGFALQNLPITSFEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFV 66
Query: 362 SHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMFQNNHDEIDFEFLGNIRGKDWRIQT 541
S+D YLHG+FSASIKLP+DYTAGVVVAFYMSNGDM++ NHDEIDFEFLGNIR K+WR+QT
Sbjct: 67 SNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQT 126
Query: 542 NIYGNGSTSIGRE 580
NIYGNGST GRE
Sbjct: 127 NIYGNGSTHSGRE 139
>ref|NP_178294.1| xyloglucan endotransglycosylase (EXGT-A3); protein id: At2g01850.1,
supported by cDNA: 18876., supported by cDNA:
gi_16649080, supported by cDNA: gi_2154608 [Arabidopsis
thaliana] gi|25313548|pir||H84429 probable
xyloglucan-specific glucanase [imported] - Arabidopsis
thaliana gi|2154609|dbj|BAA20289.1| endoxyloglucan
transferase related protein [Arabidopsis thaliana]
gi|4522010|gb|AAD21783.1| xyloglucan
endotransglycosylase (EXGT-A3) [Arabidopsis thaliana]
gi|16649081|gb|AAL24392.1| putative xyloglucan-specific
glucanase [Arabidopsis thaliana]
Length = 333
Score = 206 bits (524), Expect = 2e-52
Identities = 99/133 (74%), Positives = 114/133 (85%), Gaps = 1/133 (0%)
Frame = +2
Query: 185 LLLFCSMLSVLASGSS-RNLPIMAFDEGYTPLFGDNNLVIHSDGKLVHLSLDERTGSGFV 361
LL+F S+ S L SG + +NLPI +F+E YT LFGD NL +H DGK V L+LDERTGSGFV
Sbjct: 7 LLVFMSLFSGLVSGFALQNLPITSFEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFV 66
Query: 362 SHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMFQNNHDEIDFEFLGNIRGKDWRIQT 541
S+D YLHG+FSASIKLP+DYTAGVVVAFYMSNGDM++ NHDEIDFEFLGNIR K+WR+QT
Sbjct: 67 SNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQT 126
Query: 542 NIYGNGSTSIGRE 580
NIYGNGST GRE
Sbjct: 127 NIYGNGSTHSGRE 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,648,130
Number of Sequences: 1393205
Number of extensions: 12859482
Number of successful extensions: 41717
Number of sequences better than 10.0: 199
Number of HSP's better than 10.0 without gapping: 40250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41610
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
