Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017412A_C01 KMC017412A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK07610.1|AF319771_2 prohibitin 1-like protein [Brassica napus] 310 1e-83
ref|NP_194580.1| prohibitin-like protein; protein id: At4g28510.... 301 4e-81
gb|AAM65593.1| prohibitin-like protein [Arabidopsis thaliana] 301 4e-81
ref|NP_179643.1| putative prohibitin; protein id: At2g20530.1, s... 298 4e-80
gb|AAF68384.1|AF236368_1 prohibitin [Zea mays] 290 1e-77
>gb|AAK07610.1|AF319771_2 prohibitin 1-like protein [Brassica napus]
Length = 290
Score = 310 bits (793), Expect = 1e-83
Identities = 153/179 (85%), Positives = 169/179 (93%), Gaps = 1/179 (0%)
Frame = +3
Query: 30 MNFKNVNVPKVPGGG-VAALLKVSIIGGLVVYGATNSLYNVEGGHRAIVFNRIIGVKDKV 206
MN NV VPKVPGGG V+ALLK+ IIGGL +YGAT+SLYNV+GGHRAI+FNR++GVKDKV
Sbjct: 1 MNLNNVKVPKVPGGGAVSALLKIGIIGGLGLYGATHSLYNVDGGHRAIMFNRLVGVKDKV 60
Query: 207 YPEGTHIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPDQLPTVYRT 386
YPEGTH+M+PWFERPVIYDVRARP+LVESTSGSRDLQMVKIGLRVLTRP+ DQLP +YRT
Sbjct: 61 YPEGTHLMVPWFERPVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYRT 120
Query: 387 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERASQFNIALDDV 563
LGENY+ERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILT+RA+ FNIALDDV
Sbjct: 121 LGENYSERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTQRATNFNIALDDV 179
>ref|NP_194580.1| prohibitin-like protein; protein id: At4g28510.1, supported by
cDNA: 40688., supported by cDNA: gi_20260657, supported
by cDNA: gi_4097687 [Arabidopsis thaliana]
gi|7488227|pir||T04622 prohibitin-like protein F20O9.200
- Arabidopsis thaliana gi|2842494|emb|CAA16891.1|
prohibitin-like protein [Arabidopsis thaliana]
gi|4097688|gb|AAD00155.1| prohibitin 1
gi|4097694|gb|AAD00158.1| prohibitin 1 [Arabidopsis
thaliana] gi|7269706|emb|CAB81439.1| prohibitin-like
protein [Arabidopsis thaliana]
gi|20260658|gb|AAM13227.1| prohibitin-like protein
[Arabidopsis thaliana] gi|23198006|gb|AAN15530.1|
prohibitin-like protein [Arabidopsis thaliana]
Length = 288
Score = 301 bits (771), Expect = 4e-81
Identities = 148/175 (84%), Positives = 166/175 (94%), Gaps = 1/175 (0%)
Frame = +3
Query: 42 NVNVPKVPGGG-VAALLKVSIIGGLVVYGATNSLYNVEGGHRAIVFNRIIGVKDKVYPEG 218
NV VPK+PGGG ++ LLKV IIGGL +YGAT+SLYNVEGGHRAI+FNR++G+KDKVYPEG
Sbjct: 3 NVKVPKIPGGGAISTLLKVGIIGGLGLYGATHSLYNVEGGHRAIMFNRLVGIKDKVYPEG 62
Query: 219 THIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPDQLPTVYRTLGEN 398
TH+MIPWFERPVIYDVRARP+LVESTSGSRDLQMVKIGLRVLTRP+ DQLP +YR+LGEN
Sbjct: 63 THLMIPWFERPVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYRSLGEN 122
Query: 399 YNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERASQFNIALDDV 563
Y+ERVLPSII+ETLKAVVAQYNASQLITQRE VSREIRKILTERA+ FN+ALDDV
Sbjct: 123 YSERVLPSIINETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNVALDDV 177
>gb|AAM65593.1| prohibitin-like protein [Arabidopsis thaliana]
Length = 288
Score = 301 bits (771), Expect = 4e-81
Identities = 148/175 (84%), Positives = 166/175 (94%), Gaps = 1/175 (0%)
Frame = +3
Query: 42 NVNVPKVPGGG-VAALLKVSIIGGLVVYGATNSLYNVEGGHRAIVFNRIIGVKDKVYPEG 218
NV VPK+PGGG ++ LLKV IIGGL +YGAT+SLYNVEGGHRAI+FNR++G+KDKVYPEG
Sbjct: 3 NVKVPKIPGGGAISTLLKVGIIGGLGLYGATHSLYNVEGGHRAIMFNRLVGIKDKVYPEG 62
Query: 219 THIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPDQLPTVYRTLGEN 398
TH+MIPWFERPVIYDVRARP+LVESTSGSRDLQMVKIGLRVLTRP+ DQLP +YR+LGEN
Sbjct: 63 THLMIPWFERPVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYRSLGEN 122
Query: 399 YNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERASQFNIALDDV 563
Y+ERVLPSII+ETLKAVVAQYNASQLITQRE VSREIRKILTERA+ FN+ALDDV
Sbjct: 123 YSERVLPSIINETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNVALDDV 177
>ref|NP_179643.1| putative prohibitin; protein id: At2g20530.1, supported by cDNA:
6176., supported by cDNA: gi_18252886 [Arabidopsis
thaliana] gi|25314491|pir||D84590 probable prohibitin
[imported] - Arabidopsis thaliana
gi|4586035|gb|AAD25653.1| putative prohibitin
[Arabidopsis thaliana] gi|18252887|gb|AAL62370.1|
putative prohibitin [Arabidopsis thaliana]
gi|21387071|gb|AAM47939.1| putative prohibitin
[Arabidopsis thaliana] gi|21593956|gb|AAM65902.1|
putative prohibitin [Arabidopsis thaliana]
Length = 286
Score = 298 bits (762), Expect = 4e-80
Identities = 147/178 (82%), Positives = 165/178 (92%)
Frame = +3
Query: 30 MNFKNVNVPKVPGGGVAALLKVSIIGGLVVYGATNSLYNVEGGHRAIVFNRIIGVKDKVY 209
MNFKNV VPK PGGGV A + +IGGL +YGAT++LYNV+GGHRAIVFNR++G+KDKVY
Sbjct: 1 MNFKNVKVPKGPGGGVIAAV---VIGGLSLYGATHTLYNVDGGHRAIVFNRLVGIKDKVY 57
Query: 210 PEGTHIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPDQLPTVYRTL 389
PEGTH+MIPWFERP+IYDVRA+P+LVESTSGSRDLQMVKIGLRVLTRP+ DQLP VYR+L
Sbjct: 58 PEGTHLMIPWFERPIIYDVRAKPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEVYRSL 117
Query: 390 GENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERASQFNIALDDV 563
GENY ERVLPSIIHETLKAVVAQYNASQLITQRE+VSREIRKILT RA+ F+IALDDV
Sbjct: 118 GENYRERVLPSIIHETLKAVVAQYNASQLITQRESVSREIRKILTLRAANFHIALDDV 175
>gb|AAF68384.1|AF236368_1 prohibitin [Zea mays]
Length = 289
Score = 290 bits (741), Expect = 1e-77
Identities = 145/178 (81%), Positives = 158/178 (88%)
Frame = +3
Query: 30 MNFKNVNVPKVPGGGVAALLKVSIIGGLVVYGATNSLYNVEGGHRAIVFNRIIGVKDKVY 209
MN K + VP G +AL+KV++ GG VY A NSLYNVEGGHRAIVFNRI G+KDKVY
Sbjct: 1 MNVKGGSRIPVPPPGASALVKVAVFGGAAVYAAVNSLYNVEGGHRAIVFNRIQGIKDKVY 60
Query: 210 PEGTHIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPDQLPTVYRTL 389
PEGTH MIPWFERP+IYDVRARP+LVESTSGSRDLQMVKIGLRVLTRP+P++LP +YRTL
Sbjct: 61 PEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPERLPHIYRTL 120
Query: 390 GENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERASQFNIALDDV 563
GEN+NERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERA FNIALDDV
Sbjct: 121 GENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARFFNIALDDV 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,032,603
Number of Sequences: 1393205
Number of extensions: 11243791
Number of successful extensions: 30824
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 29431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30729
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
