Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017372A_C01 KMC017372A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174597.1| expressed protein; protein id: At1g33270.1 [Ara... 219 2e-56
ref|NP_473429.1| adiponutrin [Mus musculus] gi|14594694|gb|AAK68... 45 5e-04
ref|NP_473102.1| hypothetical protein [Plasmodium falciparum 3D7... 44 0.001
emb|CAA98440.2| Hypothetical protein D1054.1 [Caenorhabditis ele... 44 0.001
ref|NP_505749.1| Patatin-like phospholipase family member [Caeno... 44 0.002
>ref|NP_174597.1| expressed protein; protein id: At1g33270.1 [Arabidopsis thaliana]
gi|25403178|pir||E86456 unknown protein [imported] -
Arabidopsis thaliana
gi|12322575|gb|AAG51289.1|AC027035_12 unknown protein
[Arabidopsis thaliana]
Length = 364
Score = 219 bits (558), Expect = 2e-56
Identities = 107/143 (74%), Positives = 119/143 (82%)
Frame = -3
Query: 564 VAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPRPATMFRNRLCIDGGLTLFM 385
VA+TQ+ WRPRGLLVDQFDSK DLI+AVFTSSFIPG PATMFRNRLC+DGGLTLFM
Sbjct: 219 VAITQVFWRPRGLLVDQFDSKSDLIDAVFTSSFIPG-----PATMFRNRLCVDGGLTLFM 273
Query: 384 PPTSAAQTVRVCAFPASRLGLQGIGISPDCNPENACSPRQLFNWALEPAEDAVLDRLFEL 205
PPT+AA+TVRVCAF AS L+GI I PDCNP N + RQL NWALEPAED VL+RLFEL
Sbjct: 274 PPTAAAKTVRVCAFSASNFKLKGIEICPDCNPLNRATSRQLLNWALEPAEDEVLERLFEL 333
Query: 204 GYLDAAVWAKENPVEEIVQDDSP 136
GY DAA WA+ NPVE +V DD+P
Sbjct: 334 GYADAATWAEMNPVEGLVYDDTP 356
>ref|NP_473429.1| adiponutrin [Mus musculus] gi|14594694|gb|AAK68636.1| adiponutrin
[Mus musculus] gi|20380495|gb|AAH28792.1| adiponutrin
[Mus musculus]
Length = 413
Score = 45.4 bits (106), Expect = 5e-04
Identities = 39/135 (28%), Positives = 61/135 (44%), Gaps = 13/135 (9%)
Frame = -3
Query: 528 LLVDQFDSKEDLINAVFTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSAAQTVRVC 349
+LV +F SK+++++A+ S FIP + P + FR +DGG++ +P A T+ V
Sbjct: 127 VLVSEFHSKDEVVDALVCSCFIPLFSGLIPPS-FRGERYVDGGVSDNVPVLDAKTTITVS 185
Query: 348 AFPASRLGLQGIGISPDCNPEN------------ACSPR-QLFNWALEPAEDAVLDRLFE 208
F I P N C+ QL AL P++ V+ L
Sbjct: 186 PFYGEH------DICPKVKSTNFFHVNITNLSLRLCTGNLQLLTRALFPSDVKVMGELCY 239
Query: 207 LGYLDAAVWAKENPV 163
GYLDA + +EN +
Sbjct: 240 QGYLDAFRFLEENGI 254
>ref|NP_473102.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494324|pir||E71604 hypothetical protein PFB0870w -
malaria parasite (Plasmodium falciparum)
gi|3845297|gb|AAC71963.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2380
Score = 44.3 bits (103), Expect = 0.001
Identities = 27/86 (31%), Positives = 43/86 (49%), Gaps = 5/86 (5%)
Frame = -3
Query: 564 VAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPRPATMFRNRLCIDGGLT--- 394
V +TQ+L + L ++ F DLI+A+ S IP YL+ FRN+ CIDG +
Sbjct: 762 VGITQILPYYKKLNINNFYDDNDLISAIIASCNIPMYLSSNIFVNFRNKKCIDGFFSTKK 821
Query: 393 --LFMPPTSAAQTVRVCAFPASRLGL 322
P T + ++V F + +G+
Sbjct: 822 KDFGCPNTRTERIIKVSPFDSDYVGI 847
Score = 34.7 bits (78), Expect = 0.85
Identities = 15/36 (41%), Positives = 25/36 (68%)
Frame = -3
Query: 288 ENACSPRQLFNWALEPAEDAVLDRLFELGYLDAAVW 181
+N S R+LF ALE +E+ V+ ++++LG DA +W
Sbjct: 2017 KNVYSMRKLFKIALEGSEEKVIKKIYDLGRSDAHLW 2052
>emb|CAA98440.2| Hypothetical protein D1054.1 [Caenorhabditis elegans]
Length = 256
Score = 43.9 bits (102), Expect = 0.001
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Frame = -3
Query: 564 VAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIP----GYLAPRPATMFRNRLCIDGGL 397
+++T+L + +++++FDS++ LI+ + S +IP GY P + CIDGG+
Sbjct: 118 ISITKLK-KWENIMINKFDSRDHLISCLLASCYIPMYSMGYKGVPP--IINQEECIDGGM 174
Query: 396 TLFMPPTSAAQTVRVCAFPASRLGLQGIGISPDCNPEN----------ACSPRQLFNW-- 253
T +P T+ F + I PD +P S R L+
Sbjct: 175 TNNLPTFPDVLTITCSPFSSQ------ADICPD-DPSTWNIEFGKQIFKASRRNLYRGAR 227
Query: 252 ALEPAEDAVLDRLFELGYLDAAVWAKEN 169
AL P +L + +E+G DA ++ K+N
Sbjct: 228 ALFPPNRFILKQYYEMGISDADIFIKKN 255
>ref|NP_505749.1| Patatin-like phospholipase family member [Caenorhabditis elegans]
gi|7498121|pir||T20303 hypothetical protein D1054.1 -
Caenorhabditis elegans
Length = 268
Score = 43.5 bits (101), Expect = 0.002
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Frame = -3
Query: 528 LLVDQFDSKEDLINAVFTSSFIP----GYLAPRPATMFRNRLCIDGGLTLFMPPTSAAQT 361
+++++FDS++ LI+ + S +IP GY P + CIDGG+T +P T
Sbjct: 141 IMINKFDSRDHLISCLLASCYIPMYSMGYKGVPP--IINQEECIDGGMTNNLPTFPDVLT 198
Query: 360 VRVCAFPASRLGLQGIGISPDCNPEN----------ACSPRQLFNW--ALEPAEDAVLDR 217
+ F + I PD +P S R L+ AL P +L +
Sbjct: 199 ITCSPFSSQ------ADICPD-DPSTWNIEFGKQIFKASRRNLYRGARALFPPNRFILKQ 251
Query: 216 LFELGYLDAAVWAKEN 169
+E+G DA ++ K+N
Sbjct: 252 YYEMGISDADIFIKKN 267
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,877,230
Number of Sequences: 1393205
Number of extensions: 11310123
Number of successful extensions: 40757
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 39322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40706
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
