Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017312A_C01 KMC017312A_c01
(408 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188951.2| hypothetical protein; protein id: At3g23100.1, ... 40 0.007
ref|NP_649476.1| CG1078-PA [Drosophila melanogaster] gi|7296845|... 39 0.012
gb|AAB22964.1| calreticulin=63 kda calcium-binding protein [rats... 38 0.026
ref|NP_071794.1| calreticulin [Rattus norvegicus] gi|117505|sp|P... 38 0.026
ref|NP_647745.1| CG1240-PA [Drosophila melanogaster] gi|7292276|... 37 0.058
>ref|NP_188951.2| hypothetical protein; protein id: At3g23100.1, supported by cDNA:
gi_9800642 [Arabidopsis thaliana]
gi|9294200|dbj|BAB02102.1|
gb|AAC13900.1~gene_id:MXC7.14~similar to unknown protein
[Arabidopsis thaliana]
gi|9800643|gb|AAF91285.2|AF233528_1 putative double
strand break repair protein [Arabidopsis thaliana]
Length = 264
Score = 40.0 bits (92), Expect = 0.007
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -1
Query: 375 QEEEDTDKTESFD-GDSDFDKSDEESEKDITSSSKDVIRARKPSGRKRTTR 226
+EEE TDK ESF+ G SD +KS+EE+ K TSS K G KR R
Sbjct: 221 EEEESTDKAESFESGRSDDEKSEEEASKKATSS--------KARGGKRAAR 263
>ref|NP_649476.1| CG1078-PA [Drosophila melanogaster] gi|7296845|gb|AAF52120.1|
CG1078-PA [Drosophila melanogaster]
Length = 701
Score = 39.3 bits (90), Expect = 0.012
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = -1
Query: 402 QDKAEKSPPQEEEDTDKTESFDGDSDFDKSDEESEKDITSSSKDVIRARKPSGRKRT 232
+DK + ++++D DK + D + D DK D+E EKD SS ++ R+R+ S R+++
Sbjct: 606 RDKDKDKDKEKDKDKDKDKEKDKEKDKDK-DKEKEKDKESSRRERSRSREKSSRRKS 661
>gb|AAB22964.1| calreticulin=63 kda calcium-binding protein [rats, liver, Sprague
Dawley, Peptide Partial, 248 aa]
Length = 248
Score = 38.1 bits (87), Expect = 0.026
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 405 KQDKAEKSPPQEEEDTDKTESFDGDSDFDKSD--EESEKDITSSSKD 271
K+++ +K +EEE DK + D D D D+ D EE E+D T +KD
Sbjct: 200 KEEEEDKKRKEEEEAEDKEDEDDRDEDEDEEDEKEEDEEDATGQAKD 246
>ref|NP_071794.1| calreticulin [Rattus norvegicus] gi|117505|sp|P18418|CRTC_RAT
CALRETICULIN PRECURSOR (CRP55) (CALREGULIN) (HACBP)
(ERP60) (CALBP) (CALCIUM-BINDING PROTEIN 3) (CABP3)
gi|627974|pir||JH0819 calreticulin precursor - rat
gi|55855|emb|CAA37446.1| precursor (AA -17 to 399)
[Rattus norvegicus] gi|488841|emb|CAA55890.1|
calreticulin [Rattus norvegicus]
gi|1845572|dbj|BAA11345.1| calreticulin [Rattus
norvegicus]
Length = 416
Score = 38.1 bits (87), Expect = 0.026
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 405 KQDKAEKSPPQEEEDTDKTESFDGDSDFDKSD--EESEKDITSSSKD 271
K+++ +K +EEE DK + D D D D+ D EE E+D T +KD
Sbjct: 368 KEEEEDKKRKEEEEAEDKEDEDDRDEDEDEEDEKEEDEEDATGQAKD 414
>ref|NP_647745.1| CG1240-PA [Drosophila melanogaster] gi|7292276|gb|AAF47684.1|
CG1240-PA [Drosophila melanogaster]
gi|16769634|gb|AAL29036.1| LD45195p [Drosophila
melanogaster]
Length = 244
Score = 37.0 bits (84), Expect = 0.058
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -1
Query: 375 QEEEDTDKTESFDGDSDFDKSDEESEKDITSSSKDVIRARKPSGRKRTTRLT*H 214
Q+EED D E D D+D D E SE++ SSS++ +K K+ + T H
Sbjct: 61 QDEEDEDDDEGKDPDADPDDESEPSEEEDPSSSEEEAAKKKKQSPKKRPQPTKH 114
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,780,864
Number of Sequences: 1393205
Number of extensions: 6073522
Number of successful extensions: 47490
Number of sequences better than 10.0: 792
Number of HSP's better than 10.0 without gapping: 28182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42139
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
