Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017299A_C01 KMC017299A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197118.1| CRS2-like protein; protein id: At5g16140.1 [Ara... 127 8e-29
ref|NP_198645.1| CRS2 -like protein; protein id: At5g38290.1 [Ar... 125 2e-28
dbj|BAC43017.1| putative CRS2 [Arabidopsis thaliana] 125 2e-28
gb|AAF27939.1|AF225708_1 CRS2 [Zea mays] 125 3e-28
ref|NP_197484.1| putative protein; protein id: At5g19830.1 [Arab... 78 6e-14
>ref|NP_197118.1| CRS2-like protein; protein id: At5g16140.1 [Arabidopsis thaliana]
gi|11357233|pir||T51484 CRS2-like protein - Arabidopsis
thaliana gi|9755824|emb|CAC01855.1| CRS2-like protein
[Arabidopsis thaliana]
Length = 240
Score = 127 bits (318), Expect = 8e-29
Identities = 57/84 (67%), Positives = 77/84 (90%)
Frame = -1
Query: 484 GLKNVMGHLDGSRDFPRLAIGIGNPPGSMDSRAFLLQKFSSVERQQIDDSLEQGVQAIRT 305
G+K+VMGHLDG R+FPRL+IGIG PPG+MD +AFLLQKFS +E++QI+++LEQG +A++T
Sbjct: 157 GVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKT 216
Query: 304 LVLHGFSQHVSRFNLGQKYKYHQV 233
LVL+GF+Q +SRFNL QKYK+H+V
Sbjct: 217 LVLNGFNQGISRFNLVQKYKFHKV 240
>ref|NP_198645.1| CRS2 -like protein; protein id: At5g38290.1 [Arabidopsis thaliana]
gi|9758861|dbj|BAB09443.1| contains similarity to
peptidyl-tRNA hydrolase~gene_id:MSI17.2 [Arabidopsis
thaliana]
Length = 246
Score = 125 bits (314), Expect = 2e-28
Identities = 57/84 (67%), Positives = 72/84 (84%)
Frame = -1
Query: 484 GLKNVMGHLDGSRDFPRLAIGIGNPPGSMDSRAFLLQKFSSVERQQIDDSLEQGVQAIRT 305
GLKNV HL+G R +PRL+IGIGNPPG+MD +AFLLQKFS +ER+Q+D+ LEQGV+ ++T
Sbjct: 163 GLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKT 222
Query: 304 LVLHGFSQHVSRFNLGQKYKYHQV 233
LV GFS +SRFNLGQKYK+H+V
Sbjct: 223 LVEEGFSDSISRFNLGQKYKFHKV 246
>dbj|BAC43017.1| putative CRS2 [Arabidopsis thaliana]
Length = 246
Score = 125 bits (314), Expect = 2e-28
Identities = 57/84 (67%), Positives = 72/84 (84%)
Frame = -1
Query: 484 GLKNVMGHLDGSRDFPRLAIGIGNPPGSMDSRAFLLQKFSSVERQQIDDSLEQGVQAIRT 305
GLKNV HL+G R +PRL+IGIGNPPG+MD +AFLLQKFS +ER+Q+D+ LEQGV+ ++T
Sbjct: 163 GLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKT 222
Query: 304 LVLHGFSQHVSRFNLGQKYKYHQV 233
LV GFS +SRFNLGQKYK+H+V
Sbjct: 223 LVEEGFSDSISRFNLGQKYKFHKV 246
>gb|AAF27939.1|AF225708_1 CRS2 [Zea mays]
Length = 256
Score = 125 bits (313), Expect = 3e-28
Identities = 61/84 (72%), Positives = 70/84 (82%)
Frame = -1
Query: 484 GLKNVMGHLDGSRDFPRLAIGIGNPPGSMDSRAFLLQKFSSVERQQIDDSLEQGVQAIRT 305
GL+NV+ HLDG R+FPRL+IGIG+PPG MD RAFLLQKFSS ER QID +LEQGV A+RT
Sbjct: 173 GLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRT 232
Query: 304 LVLHGFSQHVSRFNLGQKYKYHQV 233
LVL GFS RFNL QKYK+H+V
Sbjct: 233 LVLKGFSGSTERFNLVQKYKFHRV 256
>ref|NP_197484.1| putative protein; protein id: At5g19830.1 [Arabidopsis thaliana]
Length = 234
Score = 77.8 bits (190), Expect = 6e-14
Identities = 41/96 (42%), Positives = 57/96 (58%), Gaps = 15/96 (15%)
Frame = -1
Query: 484 GLKNVMGHLDGSRDFPRLAIGIGNPPGSMDSRAFLLQKFSSVERQ--------------- 350
GLK+VM H G+R+F RL IGIG PPG MD +AFLLQKFS R+
Sbjct: 130 GLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERELYLWLPVYCVFLG 189
Query: 349 QIDDSLEQGVQAIRTLVLHGFSQHVSRFNLGQKYKY 242
++D +L +GV A++ ++ F + FN+ QKYK+
Sbjct: 190 KMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKH 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,505,282
Number of Sequences: 1393205
Number of extensions: 8273385
Number of successful extensions: 16856
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 16576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16840
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
