Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017248A_C01 KMC017248A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177456.1| hypothetical protein; protein id: At1g73130.1 [... 42 0.007
ref|NP_173220.1| unknown protein; protein id: At1g17780.1 [Arabi... 36 0.37
pir||G86312 hypothetical protein F2H15.1 - Arabidopsis thaliana ... 36 0.37
ref|NP_565715.1| expressed protein; protein id: At2g31130.1, sup... 35 0.48
ref|NP_671858.1| hypothetical protein; protein id: At2g16575.1 [... 35 0.62
>ref|NP_177456.1| hypothetical protein; protein id: At1g73130.1 [Arabidopsis
thaliana] gi|25406253|pir||B96757 hypothetical protein
T18K17.21 [imported] - Arabidopsis thaliana
gi|5903102|gb|AAD55660.1|AC008017_33 Hypothetical
protein [Arabidopsis thaliana]
gi|12324322|gb|AAG52131.1|AC010556_13 hypothetical
protein; 68240-65811 [Arabidopsis thaliana]
Length = 646
Score = 41.6 bits (96), Expect = 0.007
Identities = 31/98 (31%), Positives = 49/98 (49%), Gaps = 11/98 (11%)
Frame = -1
Query: 416 LEETCVMVTRDDLQFVPKAR---VNSKTSK-RPFS------LSKKFARKQEYEELAIWHG 267
+ E C M +R+D +V + ++ +T K R F L+ K R++EYE+L IW+G
Sbjct: 549 MAELCGMESREDPLYVEDSELYAIHLRTKKLRSFKRKVLDVLTSKRRREKEYEQLPIWYG 608
Query: 266 NNEKGKN-GCLENSGRTLQEDQKELLLPGISEPEWELL 156
+ G + E S + D K LL + +WELL
Sbjct: 609 DAGMGSDLATKEESQQVEATDSKSSLLLESEDSQWELL 646
>ref|NP_173220.1| unknown protein; protein id: At1g17780.1 [Arabidopsis thaliana]
Length = 221
Score = 35.8 bits (81), Expect = 0.37
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 326 SLSKKFARKQEYEELAIWHGNNEKGKN--GCLENSGRTLQEDQKELLLPGISE-PEWELL 156
++ K R++EYE+LAIW G+ + G + E S ++ + +P +SE EWE+L
Sbjct: 162 AIKSKRRREKEYEQLAIWFGDADMGCDLVNDKEQSTTSIDSKSSQTNVPVVSEDSEWEIL 221
>pir||G86312 hypothetical protein F2H15.1 - Arabidopsis thaliana
gi|9665056|gb|AAF97258.1|AC034106_1 Contains a DNA
binding domain with preference for A/T rich regions
PF|02178, a domain of unknown function PF|02182 and a SET
domain PF|00856. [Arabidopsis thaliana]
Length = 954
Score = 35.8 bits (81), Expect = 0.37
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 326 SLSKKFARKQEYEELAIWHGNNEKGKN--GCLENSGRTLQEDQKELLLPGISE-PEWELL 156
++ K R++EYE+LAIW G+ + G + E S ++ + +P +SE EWE+L
Sbjct: 895 AIKSKRRREKEYEQLAIWFGDADMGCDLVNDKEQSTTSIDSKSSQTNVPVVSEDSEWEIL 954
>ref|NP_565715.1| expressed protein; protein id: At2g31130.1, supported by cDNA:
gi_16612316 [Arabidopsis thaliana]
gi|16612317|gb|AAL27517.1|AF439849_1 At2g31130/T16B12.6
[Arabidopsis thaliana] gi|20197328|gb|AAC63838.2|
expressed protein [Arabidopsis thaliana]
gi|23506163|gb|AAN31093.1| At2g31130/T16B12.6
[Arabidopsis thaliana]
Length = 419
Score = 35.4 bits (80), Expect = 0.48
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Frame = -1
Query: 416 LEETCVMVTRDDLQFV-PKARVNSKTS-----KRPFSLSKKFARKQEYEELA-IWHGNNE 258
+EE+C++V RD+ V P N K + S K R++EY+ LA W+ +
Sbjct: 333 VEESCILVDRDEFHSVFPDKMENDKHKPYKKIRDAISSRMKQNREKEYKRLARQWYAEDV 392
Query: 257 KGKNGCLENSGRTLQEDQKELLLPGISEPEWELL 156
+ C +N + ++E+Q E EWELL
Sbjct: 393 ENGRECGDNP-KPIEENQSS------EESEWELL 419
>ref|NP_671858.1| hypothetical protein; protein id: At2g16575.1 [Arabidopsis
thaliana]
Length = 170
Score = 35.0 bits (79), Expect = 0.62
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = -1
Query: 326 SLSKKFARKQEYEELAIWHGNNEKGKN--GCLENSGRTLQEDQKELLLPGISE-PEWELL 156
++ K R++EYE+LAIW G+ + G + E++ ++ + +P +SE EWELL
Sbjct: 111 AIKSKRRREKEYEQLAIWFGDADMGCDLVDNKEHATTSIDSKSSQSNVPVVSEDSEWELL 170
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,623,118
Number of Sequences: 1393205
Number of extensions: 10722739
Number of successful extensions: 29325
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29316
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
