Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017243A_C01 KMC017243A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D84593 hypothetical protein At2g20790 [imported] - Arabidop... 86 2e-16
ref|NP_179672.2| unknown protein; protein id: At2g20790.1, suppo... 86 2e-16
ref|XP_218012.1| similar to formyl peptide receptor 1 [Mus muscu... 34 1.3
dbj|BAA91828.1| unnamed protein product [Homo sapiens] 33 2.1
ref|NP_060699.2| hypothetical protein FLJ10813 [Homo sapiens] gi... 33 2.1
>pir||D84593 hypothetical protein At2g20790 [imported] - Arabidopsis thaliana
gi|4454469|gb|AAD20916.1| unknown protein [Arabidopsis
thaliana]
Length = 475
Score = 86.3 bits (212), Expect = 2e-16
Identities = 39/58 (67%), Positives = 49/58 (84%)
Frame = -1
Query: 413 SQVSFKIIGASVSGIAVDPKSVSIYPAVKAPMEFSTQVTSGDYILWNTLGKCPHVATM 240
++VSFKI+GASVS +++D KSV+IYP K+P+EFS QVTSGDYILWNTLGK P A +
Sbjct: 418 AKVSFKIVGASVSRMSIDTKSVNIYPTTKSPVEFSAQVTSGDYILWNTLGKAPSAAVV 475
>ref|NP_179672.2| unknown protein; protein id: At2g20790.1, supported by cDNA:
gi_18087613, supported by cDNA: gi_19699153 [Arabidopsis
thaliana] gi|18087614|gb|AAL58937.1|AF462850_1
At2g20790/F5H14.24 [Arabidopsis thaliana]
gi|19699154|gb|AAL90943.1| At2g20790/F5H14.24
[Arabidopsis thaliana]
Length = 613
Score = 86.3 bits (212), Expect = 2e-16
Identities = 39/58 (67%), Positives = 49/58 (84%)
Frame = -1
Query: 413 SQVSFKIIGASVSGIAVDPKSVSIYPAVKAPMEFSTQVTSGDYILWNTLGKCPHVATM 240
++VSFKI+GASVS +++D KSV+IYP K+P+EFS QVTSGDYILWNTLGK P A +
Sbjct: 556 AKVSFKIVGASVSRMSIDTKSVNIYPTTKSPVEFSAQVTSGDYILWNTLGKAPSAAVV 613
>ref|XP_218012.1| similar to formyl peptide receptor 1 [Mus musculus] [Rattus
norvegicus]
Length = 351
Score = 33.9 bits (76), Expect = 1.3
Identities = 16/31 (51%), Positives = 23/31 (73%), Gaps = 2/31 (6%)
Frame = +2
Query: 44 VNEHLQNIPKKKLTAN--TTFLSFFLNCLSP 130
+ EHL+NIP+ LTA T+ L+FF +CL+P
Sbjct: 268 IREHLRNIPQSTLTAMKITSSLAFFNSCLNP 298
>dbj|BAA91828.1| unnamed protein product [Homo sapiens]
Length = 490
Score = 33.1 bits (74), Expect = 2.1
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -1
Query: 410 QVSFKIIGASVSGIAVDPKSVSIYPAVKAPMEFSTQVTSGDYILWNTLGKCP 255
++ F+I+ +++G D SV ++ + K + ++ S DY +WN+ P
Sbjct: 431 KLHFRILDYTLTGCYADQHSVQVFASGKPKISAHRKLISSDYYIWNSKAPAP 482
>ref|NP_060699.2| hypothetical protein FLJ10813 [Homo sapiens]
gi|12052894|emb|CAB66620.1| hypothetical protein [Homo
sapiens]
Length = 490
Score = 33.1 bits (74), Expect = 2.1
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -1
Query: 410 QVSFKIIGASVSGIAVDPKSVSIYPAVKAPMEFSTQVTSGDYILWNTLGKCP 255
++ F+I+ +++G D SV ++ + K + ++ S DY +WN+ P
Sbjct: 431 KLHFRILDYTLTGCYADQHSVQVFASGKPKISAHRKLISSDYYIWNSKAPAP 482
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,733,497
Number of Sequences: 1393205
Number of extensions: 9407884
Number of successful extensions: 18704
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18702
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
