Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017238A_C01 KMC017238A_c01
(465 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_113472.1| hypothetical protein [Guillardia theta] gi|2539... 35 0.51
sp|Q9KIV0|HGBC_HAEIN Hemoglobin binding protein C precursor gi|8... 32 2.5
gb|AAK51630.1|AF259266_1 hemoglobin/hemoglobin-haptoglobin bindi... 32 3.3
sp|O87296|HGPB_HAEIN Hemoglobin and hemoglobin-haptoglobin bindi... 32 3.3
sp|P44809|HGP2_HAEIN Probable hemoglobin and hemoglobin-haptoglo... 32 3.3
>ref|NP_113472.1| hypothetical protein [Guillardia theta] gi|25396853|pir||C90110
hypothetical protein orf231 [imported] - Guillardia
theta nucleomorph gi|12580723|emb|CAC27041.1|
hypothetical protein [Guillardia theta]
Length = 231
Score = 34.7 bits (78), Expect = 0.51
Identities = 15/49 (30%), Positives = 26/49 (52%)
Frame = +1
Query: 205 FAFKFLNLEYSSIHEVPSSDLFLYLTFRHDKLYFISLGKL*DHSTEINL 351
F F LNL +++P S +F+Y + YF GK+ ++ + +NL
Sbjct: 182 FIFNILNLNTIRFNQIPESKIFVYKNKKDQCFYFNVFGKINEYGSTLNL 230
>sp|Q9KIV0|HGBC_HAEIN Hemoglobin binding protein C precursor
gi|8843946|gb|AAF80178.1|AF221060_1 hemoglobin binding
protein C [Haemophilus influenzae]
Length = 993
Score = 32.3 bits (72), Expect = 2.5
Identities = 19/52 (36%), Positives = 25/52 (47%)
Frame = +1
Query: 136 DYILAWKTTYKITIYTNNQVISSFAFKFLNLEYSSIHEVPSSDLFLYLTFRH 291
DYI YK Y+ I +F L L+YS P+SD +Y TF+H
Sbjct: 688 DYIAKQNKKYKAHSYSFASTIDPTSFLRLQLKYSKGFRAPTSD-EMYFTFKH 738
>gb|AAK51630.1|AF259266_1 hemoglobin/hemoglobin-haptoglobin binding protein B [Haemophilus
influenzae]
Length = 987
Score = 32.0 bits (71), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (47%)
Frame = +1
Query: 136 DYILAWKTTYKITIYTNNQVISSFAFKFLNLEYSSIHEVPSSDLFLYLTFRH 291
DYI YK Y+ I +F L L+YS P+SD +Y TF+H
Sbjct: 684 DYIAKQNKKYKAHSYSFVSTIDPTSFLRLQLKYSKGFRTPTSD-EMYFTFKH 734
>sp|O87296|HGPB_HAEIN Hemoglobin and hemoglobin-haptoglobin binding protein B precursor
gi|3647226|gb|AAC60790.1| hemoglobin binding protein
[Haemophilus influenzae]
Length = 999
Score = 32.0 bits (71), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (47%)
Frame = +1
Query: 136 DYILAWKTTYKITIYTNNQVISSFAFKFLNLEYSSIHEVPSSDLFLYLTFRH 291
DYI YK Y+ I +F L L+YS P+SD +Y TF+H
Sbjct: 696 DYIAKQNKKYKAHSYSFVSTIDPTSFLRLQLKYSKGFRTPTSD-EMYFTFKH 746
>sp|P44809|HGP2_HAEIN Probable hemoglobin and hemoglobin-haptoglobin binding protein 2
precursor
Length = 999
Score = 32.0 bits (71), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (47%)
Frame = +1
Query: 136 DYILAWKTTYKITIYTNNQVISSFAFKFLNLEYSSIHEVPSSDLFLYLTFRH 291
DYI YK Y+ I +F L L+YS P+SD +Y TF+H
Sbjct: 694 DYIAKQNKKYKAHSYSFVSTIDPTSFLRLQLKYSKGFRTPTSD-EMYFTFKH 744
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,056,246
Number of Sequences: 1393205
Number of extensions: 6279287
Number of successful extensions: 12119
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12094
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
