Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017231A_C01 KMC017231A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF86687.1| MTD1 [Medicago truncatula] 97 9e-20
gb|AAO51349.1| similar to Dictyostelium discoideum (Slime mold).... 42 0.003
ref|NP_729212.1| CG32384-PA [Drosophila melanogaster] gi|2309404... 41 0.010
ref|XP_036942.1| similar to hypothetical protein DKFZp434H177.1 ... 40 0.017
ref|XP_036936.1| similar to hypothetical protein DKFZp434H177.1 ... 40 0.017
>gb|AAF86687.1| MTD1 [Medicago truncatula]
Length = 231
Score = 97.4 bits (241), Expect = 9e-20
Identities = 51/86 (59%), Positives = 68/86 (78%), Gaps = 3/86 (3%)
Frame = -1
Query: 532 PLRSHGGGISQRSISLSRSSLALPVAATHSDSSSSITSEDSASSSNSLSPSPTPLPPLHP 353
PLRS+ GGIS+R++SLSRS+LAL VA ++SDSSSS TS+DSA+S++ S +PLPP HP
Sbjct: 143 PLRSNSGGISKRTMSLSRSALALAVALSNSDSSSSFTSDDSATSTSYSSAPSSPLPPRHP 202
Query: 352 RHRVSLIANP---RSYSLADLQHCAI 284
+RVS +A+P +SLADL HCA+
Sbjct: 203 GNRVSSLASPLQRNFFSLADLHHCAL 228
>gb|AAO51349.1| similar to Dictyostelium discoideum (Slime mold). Hypothetical 127.0
kDa protein
Length = 1364
Score = 42.4 bits (98), Expect = 0.003
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = -1
Query: 445 SDSSSSITSEDSASSSNSLSPSPTPLPPLHP 353
SD S+SI S S+SSS+SL+P+PT LPPL P
Sbjct: 987 SDDSTSIDSSSSSSSSSSLTPTPTLLPPLSP 1017
>ref|NP_729212.1| CG32384-PA [Drosophila melanogaster] gi|23094043|gb|AAF50614.2|
CG32384-PA [Drosophila melanogaster]
Length = 1627
Score = 40.8 bits (94), Expect = 0.010
Identities = 27/82 (32%), Positives = 46/82 (55%)
Frame = -1
Query: 490 SLSRSSLALPVAATHSDSSSSITSEDSASSSNSLSPSPTPLPPLHPRHRVSLIANPRSYS 311
++ S+ P + S+S+SS TS S S+S S++PSP+ PLH + R++ + YS
Sbjct: 47 NVESSASPSPPPSLSSESASSATSPVSGSASTSVTPSPS---PLHLQRRLTFCGSLSRYS 103
Query: 310 LADLQHCAIAATMKMSSPSLGN 245
A LQ + +K + S+G+
Sbjct: 104 CAALQ---LVQNLKKVAQSVGD 122
>ref|XP_036942.1| similar to hypothetical protein DKFZp434H177.1 - human (fragment)
[Homo sapiens]
Length = 1545
Score = 40.0 bits (92), Expect = 0.017
Identities = 29/85 (34%), Positives = 42/85 (49%)
Frame = -1
Query: 499 RSISLSRSSLALPVAATHSDSSSSITSEDSASSSNSLSPSPTPLPPLHPRHRVSLIANPR 320
RS+ +RS LP A+ + SS + S S LSP P+PLPP P ++NPR
Sbjct: 200 RSLDSTRS---LPKASKSEERPSS--PDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPR 254
Query: 319 SYSLADLQHCAIAATMKMSSPSLGN 245
++ Q C + + S P LG+
Sbjct: 255 GGEGSESQPCEV---LTPSPPGLGH 276
>ref|XP_036936.1| similar to hypothetical protein DKFZp434H177.1 - human (fragment)
[Homo sapiens]
Length = 1545
Score = 40.0 bits (92), Expect = 0.017
Identities = 29/85 (34%), Positives = 42/85 (49%)
Frame = -1
Query: 499 RSISLSRSSLALPVAATHSDSSSSITSEDSASSSNSLSPSPTPLPPLHPRHRVSLIANPR 320
RS+ +RS LP A+ + SS + S S LSP P+PLPP P ++NPR
Sbjct: 200 RSLDSTRS---LPKASKSEERPSS--PDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPR 254
Query: 319 SYSLADLQHCAIAATMKMSSPSLGN 245
++ Q C + + S P LG+
Sbjct: 255 GGEGSESQPCEV---LTPSPPGLGH 276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,712,478
Number of Sequences: 1393205
Number of extensions: 9721887
Number of successful extensions: 57643
Number of sequences better than 10.0: 372
Number of HSP's better than 10.0 without gapping: 41319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51037
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
