Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017167A_C01 KMC017167A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB15353.1| unnamed protein product [Homo sapiens] 34 0.76
dbj|BAB64649.1| P0011G08.21 [Oryza sativa (japonica cultivar-gro... 33 2.2
emb|CAC86376.1| lysophospholipase [Cryptococcus neoformans var. ... 32 4.9
pir||S10724 surface protein precursor PD78, pheromone-inducible ... 31 6.5
ref|NP_465162.1| similar to membrane proteins [Listeria monocyto... 31 6.5
>dbj|BAB15353.1| unnamed protein product [Homo sapiens]
Length = 863
Score = 34.3 bits (77), Expect = 0.76
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Frame = -3
Query: 382 ILVFLFSWIGSLCFAPFFPLLGGCLGEVWYSFCHPAIKDESIIKTSFFPFPFLIGLLVMV 203
+L++L +GS P L G L + FC +D + + T FPF FL+GLL V
Sbjct: 748 LLIWLLDALGSAQPFPPVSLYGLTLFSASFFFC---ARDVATVFTLCFPFVFLLGLLPQV 804
Query: 202 VLMVSPVCHLEREIQVHVI------------PRVHSYSPSPSLV*LFLFKFPV 80
P E +H+ VHS P P+LV + F P+
Sbjct: 805 NTCPRPRSPPEALPCLHICFALTQFGNSNCPAEVHSPDPFPTLVRVAGFSKPL 857
>dbj|BAB64649.1| P0011G08.21 [Oryza sativa (japonica cultivar-group)]
Length = 255
Score = 32.7 bits (73), Expect = 2.2
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 16/106 (15%)
Frame = +2
Query: 137 NSGNYMNLNFPF*MANRRDHQDHHNQ*PNEEWERKERS-FYDALIFYGRVAKTIPYF--S 307
N+ N N + M ++ + + P E W +E F DALI YGR K I +
Sbjct: 19 NTNNNSNSSSSSEMPGKKARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEHVGT 78
Query: 308 QTTSQEREKGGK-------------TKTSYPREKKYQDRDQHWSNP 406
+TT Q R K YPR + + Q S+P
Sbjct: 79 KTTIQIRSHAQKYFLKVQKMGLAAGLPPQYPRRRLVMQQQQQQSSP 124
>emb|CAC86376.1| lysophospholipase [Cryptococcus neoformans var. neoformans]
Length = 426
Score = 31.6 bits (70), Expect = 4.9
Identities = 19/62 (30%), Positives = 31/62 (49%), Gaps = 4/62 (6%)
Frame = +3
Query: 195 IRTTITNNPMRNGKGKKEVFMMLSSFMAGWQKLY----HTSPKQPPKRGKKGAKQRLPIQ 362
+ T + N + G+ +++VF+ SS M GW LY + QP K +G K +P
Sbjct: 183 VLTDVIQNDLSQGREQRKVFLSGSS-MGGWTVLYYLLKYPPTVQPEKVASQGQKPDIPPP 241
Query: 363 EK 368
E+
Sbjct: 242 EE 243
>pir||S10724 surface protein precursor PD78, pheromone-inducible - Enterococcus
faecalis plasmid pPD1 gi|296722|emb|CAA39427.1| PD78
[Enterococcus faecalis]
Length = 510
Score = 31.2 bits (69), Expect = 6.5
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 4 GKRSLKFNQSTPPNPIFKILHQVQTTREI*TKIAKQEMGRVNKSELWELHEPEFPFLNGK 183
G++ L++N+ TP P+ K+ + TT KI E + L +EP P +
Sbjct: 150 GRQFLRYNEKTPSEPMEKLPGKTDTT----DKILLPEKPVIPDKPLVP-NEPNLPVIPEV 204
Query: 184 QERPSGPP*PI 216
E+PS P P+
Sbjct: 205 PEQPSKPDQPV 215
>ref|NP_465162.1| similar to membrane proteins [Listeria monocytogenes EGD-e]
gi|25515509|pir||AE1279 membrane proteins homolog
lmo1637 [imported] - Listeria monocytogenes (strain
EGD-e) gi|16411073|emb|CAC99715.1| similar to membrane
proteins [Listeria monocytogenes]
Length = 355
Score = 31.2 bits (69), Expect = 6.5
Identities = 15/49 (30%), Positives = 28/49 (56%)
Frame = -2
Query: 458 NQII*SPLLRCLYVVLLRDLTSVDPDPGISFLLDRKSLFCPLFPSLGRL 312
+QI+ S + C+ ++ +T + SF+L ++S+F PL PS G +
Sbjct: 187 SQILFSKYVMCIVYSIISSITLLVASFIFSFILPKQSIFMPLSPSTGAM 235
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,715,821
Number of Sequences: 1393205
Number of extensions: 11170999
Number of successful extensions: 27858
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 26972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27830
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
