Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017116A_C01 KMC017116A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567913.1| expressed protein; protein id: At4g33140.1, sup... 78 6e-14
pir||T05194 hypothetical protein F4I10.70 - Arabidopsis thaliana... 78 6e-14
gb|AAL35399.1| unknown [Zea mays] 66 3e-10
gb|AAL59235.1|AF448416_16 unknown [Zea mays] 66 3e-10
ref|NP_345403.1| conserved hypothetical protein [Streptococcus p... 35 0.36
>ref|NP_567913.1| expressed protein; protein id: At4g33140.1, supported by cDNA:
gi_15982924 [Arabidopsis thaliana]
gi|15982925|gb|AAL09809.1| AT4g33140/F4I10_70
[Arabidopsis thaliana] gi|22137262|gb|AAM91476.1|
AT4g33140/F4I10_70 [Arabidopsis thaliana]
Length = 353
Score = 77.8 bits (190), Expect = 6e-14
Identities = 33/53 (62%), Positives = 42/53 (78%)
Frame = -2
Query: 497 ECAEAGIEVLLFDYENSYPWSQNEAVDQHPLVTQVKNWEEVGPPLMSVMARIC 339
ECA G++VLLFDYENSYPWS+ E+VD+HPLVT+V NWEEV ++S+ C
Sbjct: 301 ECANIGMKVLLFDYENSYPWSKTESVDRHPLVTRVHNWEEVEQQILSLAVSKC 353
>pir||T05194 hypothetical protein F4I10.70 - Arabidopsis thaliana
gi|4455328|emb|CAB36788.1| hypothetical protein
[Arabidopsis thaliana] gi|7270262|emb|CAB80031.1|
hypothetical protein [Arabidopsis thaliana]
Length = 258
Score = 77.8 bits (190), Expect = 6e-14
Identities = 33/53 (62%), Positives = 42/53 (78%)
Frame = -2
Query: 497 ECAEAGIEVLLFDYENSYPWSQNEAVDQHPLVTQVKNWEEVGPPLMSVMARIC 339
ECA G++VLLFDYENSYPWS+ E+VD+HPLVT+V NWEEV ++S+ C
Sbjct: 206 ECANIGMKVLLFDYENSYPWSKTESVDRHPLVTRVHNWEEVEQQILSLAVSKC 258
>gb|AAL35399.1| unknown [Zea mays]
Length = 331
Score = 65.9 bits (159), Expect = 3e-10
Identities = 29/48 (60%), Positives = 36/48 (74%)
Frame = -2
Query: 500 IECAEAGIEVLLFDYENSYPWSQNEAVDQHPLVTQVKNWEEVGPPLMS 357
+ECA G+ VLLFDYE+SYPW + A + HPLVT+V NWEEV L+S
Sbjct: 278 LECANDGMRVLLFDYESSYPWCKTGADELHPLVTKVHNWEEVEEKLLS 325
>gb|AAL59235.1|AF448416_16 unknown [Zea mays]
Length = 327
Score = 65.9 bits (159), Expect = 3e-10
Identities = 29/48 (60%), Positives = 36/48 (74%)
Frame = -2
Query: 500 IECAEAGIEVLLFDYENSYPWSQNEAVDQHPLVTQVKNWEEVGPPLMS 357
+ECA G+ VLLFDYE+SYPW + A + HPLVT+V NWEEV L+S
Sbjct: 274 LECANDGMRVLLFDYESSYPWCKTGADELHPLVTKVHNWEEVEEKLLS 321
>ref|NP_345403.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|25347252|pir||B95106 conserved hypothetical protein
SP0919 [imported] - Streptococcus pneumoniae (strain
TIGR4) gi|14972393|gb|AAK75043.1| conserved hypothetical
protein [Streptococcus pneumoniae TIGR4]
Length = 419
Score = 35.4 bits (80), Expect = 0.36
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 300 HFFKNVHYTGVISTNPGHHGHQWWSHFFPVLNL 398
H+F +HY ++ N G HG+ + ++F P +NL
Sbjct: 176 HYFDEIHYIDILDCNGGDHGYPFATNFNPEINL 208
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,862,771
Number of Sequences: 1393205
Number of extensions: 10947358
Number of successful extensions: 20053
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20052
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
