Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017090A_C01 KMC017090A_c01
(885 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL49829.1| unknown protein [Arabidopsis thaliana] gi|2046536... 36 0.68
gb|AAB63623.1| cellulose synthase isolog [Arabidopsis thaliana] 36 0.68
pir||T08919 hypothetical protein T32A16.170 - Arabidopsis thalia... 36 0.68
gb|EAA21348.1| hypothetical protein [Plasmodium yoelii yoelii] 36 0.88
ref|NP_194130.1| cellulose synthase catalytic subunit - like pro... 35 1.2
>gb|AAL49829.1| unknown protein [Arabidopsis thaliana] gi|20465365|gb|AAM20086.1|
unknown protein [Arabidopsis thaliana]
Length = 722
Score = 36.2 bits (82), Expect = 0.68
Identities = 20/69 (28%), Positives = 37/69 (52%)
Frame = -2
Query: 884 KKYEQGRFDFQGAALYMSPMVVLLLVNIVCFFGGLWRLFKEKDFADMFGQLFLLSYVMAL 705
K+YEQ FDF ++ P+ + ++N++ F GL+ +F + + +L L S+ +
Sbjct: 624 KRYEQEIFDFGPSSSMFLPITTVAIMNLLAFMRGLYGIFTWGEGPVL--ELMLASFAVVN 681
Query: 704 SYPILEGIV 678
PI E +V
Sbjct: 682 CLPIYEAMV 690
>gb|AAB63623.1| cellulose synthase isolog [Arabidopsis thaliana]
Length = 730
Score = 36.2 bits (82), Expect = 0.68
Identities = 20/69 (28%), Positives = 37/69 (52%)
Frame = -2
Query: 884 KKYEQGRFDFQGAALYMSPMVVLLLVNIVCFFGGLWRLFKEKDFADMFGQLFLLSYVMAL 705
K+YEQ FDF ++ P+ + ++N++ F GL+ +F + + +L L S+ +
Sbjct: 632 KRYEQEIFDFGPSSSMFLPITTVAIMNLLAFMRGLYGIFTWGEGPVL--ELMLASFAVVN 689
Query: 704 SYPILEGIV 678
PI E +V
Sbjct: 690 CLPIYEAMV 698
>pir||T08919 hypothetical protein T32A16.170 - Arabidopsis thaliana
gi|4972104|emb|CAB43900.1| putative protein [Arabidopsis
thaliana] gi|7269249|emb|CAB81318.1| putative protein
[Arabidopsis thaliana]
Length = 686
Score = 36.2 bits (82), Expect = 0.68
Identities = 20/69 (28%), Positives = 37/69 (52%)
Frame = -2
Query: 884 KKYEQGRFDFQGAALYMSPMVVLLLVNIVCFFGGLWRLFKEKDFADMFGQLFLLSYVMAL 705
K+YEQ FDF ++ P+ + ++N++ F GL+ +F + + +L L S+ +
Sbjct: 588 KRYEQEIFDFGPSSSMFLPITTVAIMNLLAFMRGLYGIFTWGEGPVL--ELMLASFAVVN 645
Query: 704 SYPILEGIV 678
PI E +V
Sbjct: 646 CLPIYEAMV 654
>gb|EAA21348.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2974
Score = 35.8 bits (81), Expect = 0.88
Identities = 15/42 (35%), Positives = 25/42 (58%)
Frame = +3
Query: 474 DFQINSGKKTCCSKTIKRRDCFNVKKLLVSSKPKNGVVPICL 599
DFQ+N+ +KTCC++ K+ ++ K LL +N IC+
Sbjct: 1388 DFQLNNNQKTCCNRNDKKEIIYHGKNLLYIKNMENEHFNICI 1429
>ref|NP_194130.1| cellulose synthase catalytic subunit - like protein; protein id:
At4g23990.1 [Arabidopsis thaliana]
gi|7487587|pir||T08918 hypothetical protein T32A16.160 -
Arabidopsis thaliana gi|4972103|emb|CAB43899.1|
cellulose synthase catalytic subunit-like protein
[Arabidopsis thaliana] gi|7269248|emb|CAB81317.1|
cellulose synthase catalytic subunit-like protein
[Arabidopsis thaliana]
Length = 689
Score = 35.4 bits (80), Expect = 1.2
Identities = 20/69 (28%), Positives = 37/69 (52%)
Frame = -2
Query: 884 KKYEQGRFDFQGAALYMSPMVVLLLVNIVCFFGGLWRLFKEKDFADMFGQLFLLSYVMAL 705
K+YE+ F+F ++ P+ + +VN++ F GL+ LF + + +L L S+ +
Sbjct: 591 KRYEKEIFEFGPSSSMFLPLTTVAIVNLLAFVWGLYGLFAWGE--GLVLELMLASFAVVN 648
Query: 704 SYPILEGIV 678
PI E +V
Sbjct: 649 CLPIYEAMV 657
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 688,342,869
Number of Sequences: 1393205
Number of extensions: 13915515
Number of successful extensions: 31991
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 31189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31983
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47939536764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
