Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017085A_C01 KMC017085A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL26863.1|AF314923_1 phosphoenolpyruvate carboxylase houseke... 247 7e-65
pir||T09846 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 1 - up... 241 4e-63
ref|NP_175738.1| phosphoenolpyruvate carboxylase 1, putative; pr... 236 2e-61
sp|P16097|CAP2_MESCR Phosphoenolpyruvate carboxylase 2 (PEPCase ... 235 3e-61
emb|CAD10148.1| phosphoenolpyruvate carboxylase [Cucumis sativus] 234 8e-61
>gb|AAL26863.1|AF314923_1 phosphoenolpyruvate carboxylase housekeeping isozyme pepc2
[Phaseolus vulgaris]
Length = 391
Score = 247 bits (631), Expect = 7e-65
Identities = 123/137 (89%), Positives = 125/137 (90%)
Frame = -1
Query: 577 KGDPGIAALYDKLLVTGELWPFGERLREKFEECKSFLLQVAGHRDLLEGDPYLKQRLRLR 398
KGDPGIAALYDKLLVT ELW FGERLR +EE K LLQVAGHRDLLEGDPYLKQRLRLR
Sbjct: 255 KGDPGIAALYDKLLVTEELWSFGERLRSMYEETKRLLLQVAGHRDLLEGDPYLKQRLRLR 314
Query: 397 DSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYTESSKPAAELVKLNPKSEYAPGLED 218
DSY TTLNVLQAYTLKRIRDPDYHV L+PHLSKDY ESS PAAELVKLNP SEYAPGLED
Sbjct: 315 DSYTTTLNVLQAYTLKRIRDPDYHVNLKPHLSKDYMESSNPAAELVKLNPTSEYAPGLED 374
Query: 217 TLILTMKGIAAGMQNTG 167
TLILTMKGIAAGMQNTG
Sbjct: 375 TLILTMKGIAAGMQNTG 391
>pir||T09846 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 1 - upland cotton
gi|2266947|gb|AAB80714.1| phosphoenolpyruvate carboxylase
1 [Gossypium hirsutum]
Length = 965
Score = 241 bits (616), Expect = 4e-63
Identities = 118/137 (86%), Positives = 126/137 (91%)
Frame = -1
Query: 577 KGDPGIAALYDKLLVTGELWPFGERLREKFEECKSFLLQVAGHRDLLEGDPYLKQRLRLR 398
KGDPGIAALYDKLLV+ ELWPFGE LR +E+ K +LQVAGHRDLLEGDPYLKQRLRLR
Sbjct: 829 KGDPGIAALYDKLLVSKELWPFGENLRANYEDTKRLVLQVAGHRDLLEGDPYLKQRLRLR 888
Query: 397 DSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYTESSKPAAELVKLNPKSEYAPGLED 218
D+YITTLNV QAYTLKRIRDPDYHVK+RPHLS++Y ESSK AAELVKLNP SEYAPGLED
Sbjct: 889 DAYITTLNVCQAYTLKRIRDPDYHVKVRPHLSREYMESSKAAAELVKLNPTSEYAPGLED 948
Query: 217 TLILTMKGIAAGMQNTG 167
TLILTMKGIAAGMQNTG
Sbjct: 949 TLILTMKGIAAGMQNTG 965
>ref|NP_175738.1| phosphoenolpyruvate carboxylase 1, putative; protein id: At1g53310.1,
supported by cDNA: gi_15982800 [Arabidopsis thaliana]
gi|24636264|sp|Q9MAH0|CAPP_ARATH Phosphoenolpyruvate
carboxylase (PEPCase) gi|25290998|pir||D96573 protein
F12M16.21 [imported] - Arabidopsis thaliana
gi|7769868|gb|AAF69546.1|AC008007_21 F12M16.21
[Arabidopsis thaliana] gi|15982801|gb|AAL09748.1|
At1g53310/F12M16_21 [Arabidopsis thaliana]
gi|23308487|gb|AAN18213.1| At1g53310/F12M16_21
[Arabidopsis thaliana] gi|26800699|emb|CAD58725.1|
phosphoenolpyruvate carboxylase [Arabidopsis thaliana]
Length = 967
Score = 236 bits (602), Expect = 2e-61
Identities = 114/137 (83%), Positives = 123/137 (89%)
Frame = -1
Query: 577 KGDPGIAALYDKLLVTGELWPFGERLREKFEECKSFLLQVAGHRDLLEGDPYLKQRLRLR 398
KGDPGIAALYDKLLV+ ELWPFGE+LR FEE K +LQ AGH+DLLEGDPYLKQRLRLR
Sbjct: 831 KGDPGIAALYDKLLVSEELWPFGEKLRANFEETKKLILQTAGHKDLLEGDPYLKQRLRLR 890
Query: 397 DSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYTESSKPAAELVKLNPKSEYAPGLED 218
DSYITTLNV QAYTLKRIRDP YHV LRPH+SK+ ESSKPA EL++LNP SEYAPGLED
Sbjct: 891 DSYITTLNVCQAYTLKRIRDPSYHVTLRPHISKEIAESSKPAKELIELNPTSEYAPGLED 950
Query: 217 TLILTMKGIAAGMQNTG 167
TLILTMKGIAAG+QNTG
Sbjct: 951 TLILTMKGIAAGLQNTG 967
>sp|P16097|CAP2_MESCR Phosphoenolpyruvate carboxylase 2 (PEPCase 2) gi|68031|pir||QYIX2
phosphoenolpyruvate carboxylase (EC 4.1.1.31) 2 - common
ice plant gi|4469271|emb|CAA32728.2| phosphoenolpyruvate
carboxylase [Mesembryanthemum crystallinum]
Length = 960
Score = 235 bits (599), Expect = 3e-61
Identities = 115/139 (82%), Positives = 128/139 (91%), Gaps = 2/139 (1%)
Frame = -1
Query: 577 KGDPGIAALYDKLLVTGELWPFGERLREKFEECKSFLLQVAGHRDLLEGDPYLKQRLRLR 398
KGDPGIAALYDKLLV+ ELWPFGERLR FEE K +L++AGH+DLLEGDPYL+QRLRLR
Sbjct: 822 KGDPGIAALYDKLLVSEELWPFGERLRADFEETKGLILKIAGHKDLLEGDPYLRQRLRLR 881
Query: 397 DSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYTE--SSKPAAELVKLNPKSEYAPGL 224
DSYITTLN LQAYTLKRIRDP+Y+V+LRPH+SK+Y + S+KPAAELVKLNP SEYAPGL
Sbjct: 882 DSYITTLNALQAYTLKRIRDPNYNVQLRPHISKEYMDSTSNKPAAELVKLNPSSEYAPGL 941
Query: 223 EDTLILTMKGIAAGMQNTG 167
EDTLILTMKGIAAGMQNTG
Sbjct: 942 EDTLILTMKGIAAGMQNTG 960
>emb|CAD10148.1| phosphoenolpyruvate carboxylase [Cucumis sativus]
Length = 198
Score = 234 bits (596), Expect = 8e-61
Identities = 115/137 (83%), Positives = 127/137 (91%)
Frame = -1
Query: 577 KGDPGIAALYDKLLVTGELWPFGERLREKFEECKSFLLQVAGHRDLLEGDPYLKQRLRLR 398
KGDPGIAALYDKLLV+ +LW FGE+LR +EE K+ LLQVA H+DLLEGDPYL+QRLRLR
Sbjct: 62 KGDPGIAALYDKLLVSEDLWSFGEQLRANYEETKNLLLQVAKHKDLLEGDPYLRQRLRLR 121
Query: 397 DSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYTESSKPAAELVKLNPKSEYAPGLED 218
DSYITTLNV QAYTLKRIRDP+Y+VK+RPHLSK+Y ESSK AAELVKLNP+SEYAPGLED
Sbjct: 122 DSYITTLNVCQAYTLKRIRDPNYNVKVRPHLSKEYLESSKSAAELVKLNPQSEYAPGLED 181
Query: 217 TLILTMKGIAAGMQNTG 167
TLILTMKGIAAGMQNTG
Sbjct: 182 TLILTMKGIAAGMQNTG 198
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,837,456
Number of Sequences: 1393205
Number of extensions: 9948019
Number of successful extensions: 23932
Number of sequences better than 10.0: 361
Number of HSP's better than 10.0 without gapping: 22933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23705
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
