Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017079A_C01 KMC017079A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197988.2| putative protein; protein id: At5g26160.1 [Arab... 69 5e-11
dbj|BAB89134.1| B1142C05.34 [Oryza sativa (japonica cultivar-gro... 69 7e-11
ref|NP_197561.1| putative protein; protein id: At5g20610.1 [Arab... 54 2e-06
gb|AAO42220.1| unknown protein [Arabidopsis thaliana] 54 2e-06
gb|EAA06854.1| agCP7385 [Anopheles gambiae str. PEST] 33 2.4
>ref|NP_197988.2| putative protein; protein id: At5g26160.1 [Arabidopsis thaliana]
Length = 1058
Score = 68.9 bits (167), Expect = 5e-11
Identities = 41/101 (40%), Positives = 58/101 (56%)
Frame = -2
Query: 572 FRIKEIDLAGIITQAGKTHLWGTAAQQQSGYRWLLASGVGSTVQHASSKLKAIVRSSPLI 393
+RI EI LAG+ + G H W T +QQQSG RWLLA+G T++ +S+ K I+ S+
Sbjct: 870 WRITEIGLAGLKIEPGADHPWCTKSQQQSGSRWLLANGTDKTIKCQASESKVIIVSNVQA 929
Query: 392 TQKLLNPDVLWSLSYVDNHLRTNGKELAAENVHLRDPDVLF 270
T+K L D LWS+ +H + AA R+ DV+F
Sbjct: 930 TRKRL--DTLWSIISDRHHQEGDLSNSAASVPFTRNLDVIF 968
>dbj|BAB89134.1| B1142C05.34 [Oryza sativa (japonica cultivar-group)]
gi|21104755|dbj|BAB93343.1| B1131B07.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1153
Score = 68.6 bits (166), Expect = 7e-11
Identities = 44/117 (37%), Positives = 65/117 (54%)
Frame = -2
Query: 623 LARQEKGMEDDETSRFGFRIKEIDLAGIITQAGKTHLWGTAAQQQSGYRWLLASGVGSTV 444
L ++EK +E++E S F++ E+ +AG ++ KT WG QQQSG RWLLA+G+G
Sbjct: 1035 LVKEEK-IEEEEDSVPQFKVAEVHVAGFKSEPEKTKSWGNQTQQQSGSRWLLAAGMGKGN 1093
Query: 443 QHASSKLKAIVRSSPLITQKLLNPDVLWSLSYVDNHLRTNGKELAAENVHLRDPDVL 273
+H K KAI + P + D LWS+S + T ELA R+P++L
Sbjct: 1094 KHPLMKSKAIAK--PTKEAAGQSEDTLWSISSRVHGAGTRWGELAGPK---RNPNIL 1145
>ref|NP_197561.1| putative protein; protein id: At5g20610.1 [Arabidopsis thaliana]
Length = 1164
Score = 53.9 bits (128), Expect = 2e-06
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Frame = -2
Query: 617 RQEKGMEDDETSRFGFRIKEIDLAGIITQAGKTHLWGTAAQQQ---SGYRWLLASGVGST 447
++EK ME+ ++ +I E+ L G+ ++ K WG QQQ SG RWL+A+G+G
Sbjct: 1056 KEEKPMEEQGIPQY--KITEVHLTGMKSETDKKP-WGITTQQQQVQSGSRWLMANGMGK- 1111
Query: 446 VQHASSKLKAIVRSSPLITQKLLNP---DVLWSLSYVDNHLRTNGKELAAENVHLRDPDV 276
++KL PL+ KL + D LWS+S + + GK + N H+R+P+V
Sbjct: 1112 ---GNNKL-------PLMKPKLGSAKPGDKLWSVSGSGSKWKELGK-MGKSNTHIRNPNV 1160
Query: 275 LFP 267
+ P
Sbjct: 1161 IMP 1163
>gb|AAO42220.1| unknown protein [Arabidopsis thaliana]
Length = 464
Score = 53.9 bits (128), Expect = 2e-06
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Frame = -2
Query: 617 RQEKGMEDDETSRFGFRIKEIDLAGIITQAGKTHLWGTAAQQQ---SGYRWLLASGVGST 447
++EK ME+ ++ +I E+ L G+ ++ K WG QQQ SG RWL+A+G+G
Sbjct: 356 KEEKPMEEQGIPQY--KITEVHLTGMKSETDKKP-WGITTQQQQVQSGSRWLMANGMGK- 411
Query: 446 VQHASSKLKAIVRSSPLITQKLLNP---DVLWSLSYVDNHLRTNGKELAAENVHLRDPDV 276
++KL PL+ KL + D LWS+S + + GK + N H+R+P+V
Sbjct: 412 ---GNNKL-------PLMKPKLGSAKPGDKLWSVSGSGSKWKELGK-MGKSNTHIRNPNV 460
Query: 275 LFP 267
+ P
Sbjct: 461 IMP 463
>gb|EAA06854.1| agCP7385 [Anopheles gambiae str. PEST]
Length = 1812
Score = 33.5 bits (75), Expect = 2.4
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Frame = -1
Query: 522 DAPLGYSGSAAIWVPLVACEWRGEYCPTCIFKIEGHC*IFSTDYPEAAESG-----CTLE 358
+ PLGY G CEWR ++C + EG C Y A SG C LE
Sbjct: 1080 ECPLGYDGER--------CEWRKDFCTPNPCEFEGMCVNVDEGYSCACPSGKTGRRCHLE 1131
Query: 357 P 355
P
Sbjct: 1132 P 1132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,349,316
Number of Sequences: 1393205
Number of extensions: 13970323
Number of successful extensions: 35098
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 34011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35082
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
