Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017073A_C01 KMC017073A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565366.1| expressed protein; protein id: At2g14880.1, sup... 138 4e-32
gb|AAL91165.1| unknown protein [Arabidopsis thaliana] gi|2489967... 138 4e-32
gb|AAM65680.1| unknown [Arabidopsis thaliana] 132 2e-30
gb|AAM62986.1| unknown [Arabidopsis thaliana] 129 2e-29
ref|NP_195155.1| putative protein; protein id: At4g34290.1, supp... 129 2e-29
>ref|NP_565366.1| expressed protein; protein id: At2g14880.1, supported by cDNA:
41621., supported by cDNA: gi_13926218, supported by
cDNA: gi_19698858 [Arabidopsis thaliana]
gi|25411585|pir||E84522 hypothetical protein At2g14880
[imported] - Arabidopsis thaliana
gi|3650030|gb|AAC61285.1| expressed protein [Arabidopsis
thaliana] gi|13926219|gb|AAK49586.1|AF370580_1 Unknown
protein [Arabidopsis thaliana]
Length = 141
Score = 138 bits (348), Expect = 4e-32
Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 1/111 (0%)
Frame = -3
Query: 562 FALPPPPTLRMVRPVVTSATVSQPSAAGNKI-RGIMKPRKISPEMQSICGVPEISRTQAL 386
FA P LR+VR V ++ S+P+A ++ RGIMKPR +SPEMQ I +PEI+RTQAL
Sbjct: 31 FASHPAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQAL 90
Query: 385 KHIWAYIKENNLQDPENQKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 233
K IWAYIKE++LQDP+N++ I CDEKLKK+F G+D VG LEIA LI PHFL
Sbjct: 91 KRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141
>gb|AAL91165.1| unknown protein [Arabidopsis thaliana] gi|24899679|gb|AAN65054.1|
unknown protein [Arabidopsis thaliana]
Length = 141
Score = 138 bits (348), Expect = 4e-32
Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 1/111 (0%)
Frame = -3
Query: 562 FALPPPPTLRMVRPVVTSATVSQPSAAGNKI-RGIMKPRKISPEMQSICGVPEISRTQAL 386
FA P LR+VR V ++ S+P+A ++ RGIMKPR +SPEMQ I +PEI+RTQAL
Sbjct: 31 FASHPAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQAL 90
Query: 385 KHIWAYIKENNLQDPENQKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 233
K IWAYIKE++LQDP+N++ I CDEKLKK+F G+D VG LEIA LI PHFL
Sbjct: 91 KRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141
>gb|AAM65680.1| unknown [Arabidopsis thaliana]
Length = 141
Score = 132 bits (333), Expect = 2e-30
Identities = 66/111 (59%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Frame = -3
Query: 562 FALPPPPTLRMVRPVVTSATVSQPSAAGNKI-RGIMKPRKISPEMQSICGVPEISRTQAL 386
FA P +VR V ++ S+P+A ++ RGIMKPR +SPEMQ I +PEI+RTQAL
Sbjct: 31 FASHPAAKHCLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQAL 90
Query: 385 KHIWAYIKENNLQDPENQKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 233
K IWAYIKE++LQDP+N++ I CDEKLKK+F G+D VG LEIA LI PHFL
Sbjct: 91 KRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141
>gb|AAM62986.1| unknown [Arabidopsis thaliana]
Length = 144
Score = 129 bits (325), Expect = 2e-29
Identities = 66/108 (61%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Frame = -3
Query: 547 PPTLRMVRPVVTSATVSQPSAAGNKIR---GIMKPRKISPEMQSICGVPEISRTQALKHI 377
P LRMVR V ++A S K R GIMKPR +S MQ + GVPEI RTQALK I
Sbjct: 37 PTNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRI 96
Query: 376 WAYIKENNLQDPENQKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 233
WAYIKE++LQDP+N++ I CDEKLKK+F GK+ VG LEIA LI PHFL
Sbjct: 97 WAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144
>ref|NP_195155.1| putative protein; protein id: At4g34290.1, supported by cDNA:
17912., supported by cDNA: gi_14423525 [Arabidopsis
thaliana] gi|7485324|pir||T04775 hypothetical protein
F10M10.60 - Arabidopsis thaliana
gi|4455174|emb|CAB36706.1| putative protein [Arabidopsis
thaliana] gi|7270379|emb|CAB80146.1| putative protein
[Arabidopsis thaliana] gi|24899741|gb|AAN65085.1|
putative protein [Arabidopsis thaliana]
Length = 144
Score = 129 bits (325), Expect = 2e-29
Identities = 66/108 (61%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Frame = -3
Query: 547 PPTLRMVRPVVTSATVSQPSAAGNKIR---GIMKPRKISPEMQSICGVPEISRTQALKHI 377
P LRMVR V ++A S K R GIMKPR +S MQ + GVPEI RTQALK I
Sbjct: 37 PTNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRI 96
Query: 376 WAYIKENNLQDPENQKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 233
WAYIKE++LQDP+N++ I CDEKLKK+F GK+ VG LEIA LI PHFL
Sbjct: 97 WAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,751,020
Number of Sequences: 1393205
Number of extensions: 11627976
Number of successful extensions: 45065
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 38012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44191
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
