Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017032A_C01 KMC017032A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178718.1| putative retroelement pol polyprotein; protein ... 114 8e-25
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 112 4e-24
ref|NP_179636.1| putative retroelement pol polyprotein; protein ... 110 1e-23
ref|NP_683674.1| similar to putative retroelement pol polyprotei... 109 2e-23
ref|NP_179011.1| putative retroelement pol polyprotein; protein ... 107 9e-23
>ref|NP_178718.1| putative retroelement pol polyprotein; protein id: At2g07010.1
[Arabidopsis thaliana] gi|25301695|pir||D84481 probable
retroelement pol polyprotein [imported] - Arabidopsis
thaliana gi|3779026|gb|AAC67205.1| putative retroelement
pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 114 bits (286), Expect = 8e-25
Identities = 72/201 (35%), Positives = 101/201 (49%)
Frame = -2
Query: 606 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVPS 427
+LDTGA+HH+ L + + + + +G+K A + SE L+ VLYVP+
Sbjct: 385 ILDTGASHHMTGQLSLLTNIVTIPSCSVGFADGRKTFAISMGTFKLSETVSLSNVLYVPA 444
Query: 426 FNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKMIGAAEERGDLYALIDPAVKVKHPP 247
N +LISVS LVK + C + D C+LQ+R + +IG EER +Y L D A H
Sbjct: 445 LNCSLISVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLTDAATTTVH-- 502
Query: 246 VEDNIKTQVSHFNFCQFDCNLWHLRLGHTSSKKLAILQKNFPFITCKKITSPCDTCHMAK 67
K ++ D LWH RLGH S L+ L F +C + CD C AK
Sbjct: 503 -----KVDIT------TDHALWHQRLGHPSFSVLSSLPL-FSGSSCSVSSRSCDVCFRAK 550
Query: 66 QKKLSFPNSVTLSSEIFDLIH 4
Q + FP+S S++ F LIH
Sbjct: 551 QTREVFPDSSNKSTDCFSLIH 571
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 112 bits (280), Expect = 4e-24
Identities = 72/201 (35%), Positives = 100/201 (48%)
Frame = -2
Query: 606 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVPS 427
+LDTGA+HH+ L + + + + + +K A + SE L+ VLYVP+
Sbjct: 385 ILDTGASHHMTGQLSLLTNIVTIPSCSVGFADDRKTFAISMGTFKLSETVSLSNVLYVPA 444
Query: 426 FNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKMIGAAEERGDLYALIDPAVKVKHPP 247
N +LISVS LVK + C + D C+LQ+R + +IG EER +Y L D A H
Sbjct: 445 LNCSLISVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLTDAATTTVH-- 502
Query: 246 VEDNIKTQVSHFNFCQFDCNLWHLRLGHTSSKKLAILQKNFPFITCKKITSPCDTCHMAK 67
K V+ D LWH RLGH S L+ L F +C + CD C AK
Sbjct: 503 -----KVDVT------TDHALWHQRLGHPSFSVLSSLPL-FSGSSCSVSSRSCDVCFRAK 550
Query: 66 QKKLSFPNSVTLSSEIFDLIH 4
Q + FP+S S++ F LIH
Sbjct: 551 QTREVFPDSSNKSTDCFSLIH 571
>ref|NP_179636.1| putative retroelement pol polyprotein; protein id: At2g20460.1
[Arabidopsis thaliana] gi|25301701|pir||E84589 probable
retroelement pol polyprotein [imported] - Arabidopsis
thaliana gi|4586028|gb|AAD25646.1| putative retroelement
pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 110 bits (275), Expect = 1e-23
Identities = 65/202 (32%), Positives = 101/202 (49%), Gaps = 1/202 (0%)
Frame = -2
Query: 606 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVPS 427
++D+GATHHV H+ +FQ L +++P G +V ++ L VL++P
Sbjct: 443 VIDSGATHHVSHDRKLFQTLDTSIVSFVNLPTGPNVRISGVGTVLINKDIILQNVLFIPE 502
Query: 426 FNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKMIGAAEERGDLYALIDPAVKVKHPP 247
F NLIS+S+L L R++ CC +Q+ +G + G+LY L + P
Sbjct: 503 FRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVL-----DTQSPA 557
Query: 246 VEDNIKTQVSHFNFCQFDCNLWHLRLGHTSSKKLAILQKNFPFITCK-KITSPCDTCHMA 70
+ N VS +WH RLGH S +L L + K K ++ C CH+A
Sbjct: 558 ISVNAVVDVS----------VWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLA 607
Query: 69 KQKKLSFPNSVTLSSEIFDLIH 4
KQKKLSFP++ + + F+L+H
Sbjct: 608 KQKKLSFPSANNICNSTFELLH 629
>ref|NP_683674.1| similar to putative retroelement pol polyprotein; protein id:
At3g43955.1 [Arabidopsis thaliana]
Length = 1481
Score = 109 bits (273), Expect = 2e-23
Identities = 66/201 (32%), Positives = 99/201 (48%)
Frame = -2
Query: 606 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVPS 427
++D+GATHHVCH+ ++ L + +++P G +V +E L VLY+P
Sbjct: 429 IIDSGATHHVCHDKNLLMRLSETMNSSVTLPTGFGVKITCIGTVKLNEFLVLNNVLYIPD 488
Query: 426 FNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKMIGAAEERGDLYALIDPAVKVKHPP 247
F NL+SVS L K L R+ ++ CL+Q+ MIG E+ +LY L P +K
Sbjct: 489 FRLNLLSVSQLTKDLGYRVTFDEDYCLIQDHVKGLMIGRGEQINNLYVLDVPRIK----- 543
Query: 246 VEDNIKTQVSHFNFCQFDCNLWHLRLGHTSSKKLAILQKNFPFITCKKITSPCDTCHMAK 67
D ++S D +LWH RLGH S I+ F + + C C +AK
Sbjct: 544 --DFPTKEISFHANIVVDSSLWHSRLGHPSVTTSDIVTDVLGFKQRNERSFHCTICPLAK 601
Query: 66 QKKLSFPNSVTLSSEIFDLIH 4
QK+L F + + FDL+H
Sbjct: 602 QKRLPFVSKNHVCDSAFDLVH 622
>ref|NP_179011.1| putative retroelement pol polyprotein; protein id: At2g13940.1
[Arabidopsis thaliana] gi|25301698|pir||C84512 probable
retroelement pol polyprotein [imported] - Arabidopsis
thaliana gi|4388829|gb|AAD19784.1| putative retroelement
pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 107 bits (268), Expect = 9e-23
Identities = 70/201 (34%), Positives = 92/201 (44%)
Frame = -2
Query: 606 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVPS 427
+LD+GA+HH+ L + V P + +G K A + S L VL+VPS
Sbjct: 402 ILDSGASHHMTGTLSSLTNVVPVPPCPVGFADGSKAFALSVGVLTLSNTVSLTNVLFVPS 461
Query: 426 FNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKMIGAAEERGDLYALIDPAVKVKHPP 247
N LISVS L+K C D C LQ+R + +IG+ EERG +Y L D H
Sbjct: 462 LNCTLISVSKLLKQTQCLATFTDTLCFLQDRSSKTLIGSGEERGGVYYLTDVTPAKIHTA 521
Query: 246 VEDNIKTQVSHFNFCQFDCNLWHLRLGHTSSKKLAILQKNFPFITCKKITSPCDTCHMAK 67
D+ D LWH RLGH S L+ L F + + CD C AK
Sbjct: 522 NVDS-------------DQALWHQRLGHPSFSVLSSLPL-FSKTSSTVTSHSCDVCFRAK 567
Query: 66 QKKLSFPNSVTLSSEIFDLIH 4
Q + FP S+ + E F LIH
Sbjct: 568 QTREVFPESINKTEECFSLIH 588
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,890,039
Number of Sequences: 1393205
Number of extensions: 9079228
Number of successful extensions: 21772
Number of sequences better than 10.0: 303
Number of HSP's better than 10.0 without gapping: 20939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21472
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
