Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017024A_C01 KMC017024A_c01
(620 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB90634.1| protein phosphatase 2C (PP2C) [Fagus sylvatica] 313 1e-84
pir||T51101 protein phosphatase-2c [imported] - common ice plant... 293 2e-78
pir||T05680 hypothetical protein F20M13.80 - Arabidopsis thalian... 288 4e-77
ref|NP_195564.2| putative protein phosphatase-2c; protein id: At... 288 4e-77
gb|AAL32532.1| putative protein phosphatase-2c [Arabidopsis thal... 288 4e-77
>emb|CAB90634.1| protein phosphatase 2C (PP2C) [Fagus sylvatica]
Length = 397
Score = 313 bits (801), Expect = 1e-84
Identities = 149/169 (88%), Positives = 165/169 (97%)
Frame = -3
Query: 618 HNVWRVKGIIQISRSIGDVYLKKAEFNREPLYAKFRLREPFKRPILSSEPSITVHQLQPH 439
HNVWRVKG+IQISRSIGDVYLKKAEFNREPLYAKFRLREPFK+PILS++P+I+VHQLQPH
Sbjct: 219 HNVWRVKGLIQISRSIGDVYLKKAEFNREPLYAKFRLREPFKKPILSADPAISVHQLQPH 278
Query: 438 DQFIIFASDGLWEHLSNQEAVDIVQNSPRSGSARRLVKTALQEAAKKREMRYSDLRRIDR 259
DQF+IFASDGLWEHLSNQEAVDIVQN PRSGS RRL+K ALQEAAKKREMRYSDL++IDR
Sbjct: 279 DQFVIFASDGLWEHLSNQEAVDIVQNHPRSGSVRRLIKVALQEAAKKREMRYSDLKKIDR 338
Query: 258 GVRRHFHDDITVIVVYLDSNLMSRASTVKFPSVSIRGGGISLPHNTLAP 112
GVRRHFHDDITVIVV+LDSNL+SRAS+VK PS+S+RGGGI+LPHNTLAP
Sbjct: 339 GVRRHFHDDITVIVVFLDSNLVSRASSVKCPSISVRGGGINLPHNTLAP 387
>pir||T51101 protein phosphatase-2c [imported] - common ice plant (fragment)
gi|3608412|gb|AAC35951.1| protein phosphatase-2c
[Mesembryanthemum crystallinum]
Length = 309
Score = 293 bits (749), Expect = 2e-78
Identities = 143/170 (84%), Positives = 161/170 (94%), Gaps = 1/170 (0%)
Frame = -3
Query: 618 HNVWRVKGIIQISRSIGDVYLKKAEFNREPLYAKFRLREPFKRPILSSEPSITVHQLQPH 439
HNVWRVKG+IQ+SRSIGDVYLKKAEFNREPLYAKFRLREPF+RPILSSEPSI+VH+LQPH
Sbjct: 139 HNVWRVKGLIQVSRSIGDVYLKKAEFNREPLYAKFRLREPFRRPILSSEPSISVHELQPH 198
Query: 438 DQFIIFASDGLWEHLSNQEAVDIVQNSPRSGSARRLVKTALQEAAKKREMRYSDLRRIDR 259
DQF+IFASDGLWEHLSNQ+AVDIVQN+P +GSA+RLVK ALQEAAKKREMRYSDL++IDR
Sbjct: 199 DQFVIFASDGLWEHLSNQKAVDIVQNNPHNGSAKRLVKIALQEAAKKREMRYSDLKKIDR 258
Query: 258 GVRRHFHDDITVIVVYLDSNLMSRAST-VKFPSVSIRGGGISLPHNTLAP 112
GVRRHFHDDITVIVV+LDSNL+SRA+T K P +S+RGGGI+L NT AP
Sbjct: 259 GVRRHFHDDITVIVVFLDSNLVSRATTGSKGPHISVRGGGITLRSNTPAP 308
>pir||T05680 hypothetical protein F20M13.80 - Arabidopsis thaliana
gi|4467139|emb|CAB37508.1| putative protein
phosphatase-2c [Arabidopsis thaliana]
gi|7270835|emb|CAB80516.1| putative protein
phosphatase-2c [Arabidopsis thaliana]
Length = 395
Score = 288 bits (737), Expect = 4e-77
Identities = 135/169 (79%), Positives = 157/169 (92%)
Frame = -3
Query: 618 HNVWRVKGIIQISRSIGDVYLKKAEFNREPLYAKFRLREPFKRPILSSEPSITVHQLQPH 439
HNVWRVKGIIQ+SRSIGDVYLK++EFNREPLYAKFRLR PF +P+LS+EP+ITVH L+PH
Sbjct: 214 HNVWRVKGIIQVSRSIGDVYLKRSEFNREPLYAKFRLRSPFSKPLLSAEPAITVHTLEPH 273
Query: 438 DQFIIFASDGLWEHLSNQEAVDIVQNSPRSGSARRLVKTALQEAAKKREMRYSDLRRIDR 259
DQFII ASDGLWEH+SNQEAVDIVQN PR+G A+RLVK ALQEAAKKREMRYSDL++IDR
Sbjct: 274 DQFIICASDGLWEHMSNQEAVDIVQNHPRNGIAKRLVKVALQEAAKKREMRYSDLKKIDR 333
Query: 258 GVRRHFHDDITVIVVYLDSNLMSRASTVKFPSVSIRGGGISLPHNTLAP 112
GVRRHFHDDITVIVV+ D+NL+SR S ++ P+VS+RG G++LPHNTLAP
Sbjct: 334 GVRRHFHDDITVIVVFFDTNLVSRGSMLRGPAVSVRGAGVNLPHNTLAP 382
>ref|NP_195564.2| putative protein phosphatase-2c; protein id: At4g38520.1, supported
by cDNA: gi_17064755 [Arabidopsis thaliana]
Length = 400
Score = 288 bits (737), Expect = 4e-77
Identities = 135/169 (79%), Positives = 157/169 (92%)
Frame = -3
Query: 618 HNVWRVKGIIQISRSIGDVYLKKAEFNREPLYAKFRLREPFKRPILSSEPSITVHQLQPH 439
HNVWRVKGIIQ+SRSIGDVYLK++EFNREPLYAKFRLR PF +P+LS+EP+ITVH L+PH
Sbjct: 219 HNVWRVKGIIQVSRSIGDVYLKRSEFNREPLYAKFRLRSPFSKPLLSAEPAITVHTLEPH 278
Query: 438 DQFIIFASDGLWEHLSNQEAVDIVQNSPRSGSARRLVKTALQEAAKKREMRYSDLRRIDR 259
DQFII ASDGLWEH+SNQEAVDIVQN PR+G A+RLVK ALQEAAKKREMRYSDL++IDR
Sbjct: 279 DQFIICASDGLWEHMSNQEAVDIVQNHPRNGIAKRLVKVALQEAAKKREMRYSDLKKIDR 338
Query: 258 GVRRHFHDDITVIVVYLDSNLMSRASTVKFPSVSIRGGGISLPHNTLAP 112
GVRRHFHDDITVIVV+ D+NL+SR S ++ P+VS+RG G++LPHNTLAP
Sbjct: 339 GVRRHFHDDITVIVVFFDTNLVSRGSMLRGPAVSVRGAGVNLPHNTLAP 387
>gb|AAL32532.1| putative protein phosphatase-2c [Arabidopsis thaliana]
Length = 400
Score = 288 bits (737), Expect = 4e-77
Identities = 135/169 (79%), Positives = 157/169 (92%)
Frame = -3
Query: 618 HNVWRVKGIIQISRSIGDVYLKKAEFNREPLYAKFRLREPFKRPILSSEPSITVHQLQPH 439
HNVWRVKGIIQ+SRSIGDVYLK++EFNREPLYAKFRLR PF +P+LS+EP+ITVH L+PH
Sbjct: 219 HNVWRVKGIIQVSRSIGDVYLKRSEFNREPLYAKFRLRSPFSKPLLSAEPAITVHTLEPH 278
Query: 438 DQFIIFASDGLWEHLSNQEAVDIVQNSPRSGSARRLVKTALQEAAKKREMRYSDLRRIDR 259
DQFII ASDGLWEH+SNQEAVDIVQN PR+G A+RLVK ALQEAAKKREMRYSDL++IDR
Sbjct: 279 DQFIICASDGLWEHMSNQEAVDIVQNHPRNGIAKRLVKVALQEAAKKREMRYSDLKKIDR 338
Query: 258 GVRRHFHDDITVIVVYLDSNLMSRASTVKFPSVSIRGGGISLPHNTLAP 112
GVRRHFHDDITVIVV+ D+NL+SR S ++ P+VS+RG G++LPHNTLAP
Sbjct: 339 GVRRHFHDDITVIVVFFDTNLVSRGSMLRGPAVSVRGAGVNLPHNTLAP 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,664,661
Number of Sequences: 1393205
Number of extensions: 10098820
Number of successful extensions: 26001
Number of sequences better than 10.0: 387
Number of HSP's better than 10.0 without gapping: 24910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25690
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
