Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016985A_C01 KMC016985A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA24120.1| hypothetical protein [Fusobacterium nucleatum sub... 35 0.60
gb|AAL36001.1| matK [Lyonothamnus floribundus] 34 1.0
ref|XP_138928.2| similar to RIKEN cDNA 4933431D05 [Mus musculus] 33 1.3
ref|NP_703698.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.3
ref|NP_718288.1| prophage MuSo2, tail fiber protein, putative [S... 32 3.9
>gb|EAA24120.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 200
Score = 34.7 bits (78), Expect = 0.60
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Frame = +1
Query: 58 RMMSKDYSLSLIQTYKLDHYIN--MLLKHQKDKMRTL--KLSYLTNAKPSYLTNAKLIFY 225
++M K+ S+ ++ Y + HY N ++L+ +K + T+ K YL N K + K Y
Sbjct: 88 KVMYKNGSIDILNNYAILHYKNEEIILEKEKFSIETIERKNIYLLNTKFMLMKLGKEEIY 147
Query: 226 YSLIVTHIMGKKFTCIPVTTNLF-------TNSIQHPTAKDNQKQSSNL 351
+I T I GKK+ T F TN P A + SN+
Sbjct: 148 LYVIKTDI-GKKYKLYKQTKGYFKSVYAKCTNDTSLPIAMQKLSKISNI 195
>gb|AAL36001.1| matK [Lyonothamnus floribundus]
Length = 504
Score = 33.9 bits (76), Expect = 1.0
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +1
Query: 115 YINMLLKHQKDKMRTLKLSYLTNAKPSYLTNAKLIFYYSLIVTHIMGKKFTCIPVTTNL- 291
YIN L KH D L YL++ +P+ + S I+ + M K T +P+ +
Sbjct: 318 YINQLSKHPLDF-----LGYLSSVRPNLSVVRSQMLENSFIMDNAMKKLDTLVPIIPLIG 372
Query: 292 ------FTNSIQHPTAKDNQKQSSN 348
F N++ HP +K SS+
Sbjct: 373 SLAKVKFCNALGHPISKSTWADSSD 397
>ref|XP_138928.2| similar to RIKEN cDNA 4933431D05 [Mus musculus]
Length = 409
Score = 33.5 bits (75), Expect = 1.3
Identities = 19/46 (41%), Positives = 29/46 (62%), Gaps = 9/46 (19%)
Frame = -1
Query: 480 ISSSLYAWISMNKCLLMEKL*LLNKLS---------VHQYLHNINL 370
+SS+L++W+ M KC LM+KL L + S +HQYL ++NL
Sbjct: 107 VSSNLHSWLLMEKC-LMKKLVTLKQKSKEVQADWALIHQYLVDLNL 151
>ref|NP_703698.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498359|emb|CAD50310.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2368
Score = 32.7 bits (73), Expect = 2.3
Identities = 24/90 (26%), Positives = 40/90 (43%), Gaps = 1/90 (1%)
Frame = +1
Query: 40 NWKNFKRMMSKDYSLSLIQTYKLDHYINMLLKHQKDKMRTLKLS-YLTNAKPSYLTNAKL 216
N K R +D + + K + N + K+Q M L +S +++ + L N +
Sbjct: 1606 NNKEECRKFYRDLKNEMYEDMKKIFHRNKIKKNQYKLMHYLDISKFISIFEIILLKNLEN 1665
Query: 217 IFYYSLIVTHIMGKKFTCIPVTTNLFTNSI 306
I YY +V +I F CI + N F +I
Sbjct: 1666 ILYYEKVVENIYMNMFICIDILNNEFDKNI 1695
>ref|NP_718288.1| prophage MuSo2, tail fiber protein, putative [Shewanella oneidensis
MR-1] gi|24348767|gb|AAN55732.1|AE015709_15 prophage
MuSo2, tail fiber protein, putative [Shewanella
oneidensis MR-1]
Length = 575
Score = 32.0 bits (71), Expect = 3.9
Identities = 23/78 (29%), Positives = 36/78 (45%)
Frame = +1
Query: 67 SKDYSLSLIQTYKLDHYINMLLKHQKDKMRTLKLSYLTNAKPSYLTNAKLIFYYSLIVTH 246
+KD L +I Y D Y+ + D + L+ + + P+ T A L F+ S T
Sbjct: 64 TKDDHLQIIFAYFKD-YLEQIGMTVSDNEQVLQTLFSASVVPAKFTAAALSFFNSKKSTS 122
Query: 247 IMGKKFTCIPVTTNLFTN 300
I+G T + NLF+N
Sbjct: 123 ILGDSITHGAFSGNLFSN 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 380,839,970
Number of Sequences: 1393205
Number of extensions: 7345217
Number of successful extensions: 15972
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15960
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
