Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016983A_C01 KMC016983A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S25786 hypothetical protein 3 - potato transposon Tst1 gi|2... 148 5e-35
dbj|BAC06870.1| polyprotein [Oryza sativa (japonica cultivar-gro... 100 2e-20
gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa (japonica cul... 84 2e-15
ref|NP_178712.1| putative retroelement pol polyprotein; protein ... 83 2e-15
ref|NP_180042.1| putative retroelement pol polyprotein; protein ... 80 2e-14
>pir||S25786 hypothetical protein 3 - potato transposon Tst1
gi|21433|emb|CAA36615.1| ORF3 [Solanum tuberosum]
Length = 675
Score = 148 bits (373), Expect = 5e-35
Identities = 78/156 (50%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Frame = +1
Query: 115 SFRG*CERLYC*WFVLL*LCRNKYDRISGKMIASAKMKDGLYYFEDTFRNKAAQGLCGMS 294
SFR L C LC + +++SGKMI SA+ GLY+ D N ++
Sbjct: 36 SFRKLTRSLNCRVIFYSDLCEFQ-EKVSGKMIGSARESGGLYFL-DNGNNSLQLNPIFLN 93
Query: 295 CTSVRDQIMLWHNRLGHPNFQYLRHLFPDLFKNVNCSSLECESCVLAKNQ-RAPYYSQPY 471
T V +++MLWH LGHP+F YLRHL P LF+N N S +CE C +AK+ + SQ Y
Sbjct: 94 STFVLNKVMLWHYGLGHPSFYYLRHLLPQLFRNKNPSLFQCEFCEMAKHHVDTSFPSQRY 153
Query: 472 HASRPFYLIHSDVWGPSKITTQFGKRWFVTFIDDHT 579
AS+PF +IHSDVWGPS+I+T FGKRWFVTFIDDHT
Sbjct: 154 QASKPFTMIHSDVWGPSRISTMFGKRWFVTFIDDHT 189
>dbj|BAC06870.1| polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1554
Score = 100 bits (248), Expect = 2e-20
Identities = 53/131 (40%), Positives = 74/131 (56%)
Frame = +1
Query: 187 DRISGKMIASAKMKDGLYYFEDTFRNKAAQGLCGMSCTSVRDQIMLWHNRLGHPNFQYLR 366
++ +G+ I + +DGL+Y N GL + V +I L H +LGHP+F+ L
Sbjct: 495 EKWTGRRIGTGVRRDGLWYI-----NHEELGLAAV-VGDVEKEISLLHCQLGHPSFEILS 548
Query: 367 HLFPDLFKNVNCSSLECESCVLAKNQRAPYYSQPYHASRPFYLIHSDVWGPSKITTQFGK 546
L+PDLF V+ L C++C L K+ R+ Y F LIHSDVWGP +T+ G
Sbjct: 549 KLYPDLFSRVDKHRLVCDACELGKHTRSTYVGIGLRNCELFILIHSDVWGPCPVTSVSGF 608
Query: 547 RWFVTFIDDHT 579
+WFVTFID HT
Sbjct: 609 KWFVTFIDCHT 619
>gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1472
Score = 83.6 bits (205), Expect = 2e-15
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Frame = +1
Query: 187 DRISGKMIASAKMKDGLYYFEDTFRNKAAQGLCGMSCTSVRD--QIMLWHNRLGHPNFQY 360
+R +GK + +DGL+Y + R + +C + ++ ++ +++L H RLGH +F+
Sbjct: 459 ERRTGKKLGIGIRRDGLWYLD---RRGTNEDVCALMASTSKEVTEVLLLHCRLGHISFEI 515
Query: 361 LRHLFPDLFKNVNCSSLECESCVLAKNQRAPYYSQPYHASRPFYLIHSDVWGPSKITTQF 540
+ +FP F V+ L C++C K+ R Y S+ + PF LIHSDVW S + +
Sbjct: 516 MSKMFPVEFSKVDKHMLICDACEYGKHTRTSYVSRGLRSILPFMLIHSDVW-TSPVVSMS 574
Query: 541 GKRWFVTFID 570
G ++FVTFID
Sbjct: 575 GMKYFVTFID 584
>ref|NP_178712.1| putative retroelement pol polyprotein; protein id: At2g06950.1
[Arabidopsis thaliana] gi|25301693|pir||F84480 probable
retroelement pol polyprotein [imported] - Arabidopsis
thaliana gi|3779021|gb|AAC67200.1| putative retroelement
pol polyprotein [Arabidopsis thaliana]
Length = 1402
Score = 83.2 bits (204), Expect = 2e-15
Identities = 46/132 (34%), Positives = 72/132 (53%), Gaps = 1/132 (0%)
Frame = +1
Query: 187 DRISGKMIASAKMKDGLYYFEDTFRNKAAQGLCGMSCTSVRDQIMLWHNRLGHPNFQYLR 366
D+ + K++ DGLY +D + KA S D++ WH RLGHP+ Q L+
Sbjct: 426 DKATKKLLIMGSTCDGLYCLKDDSQFKA---FFSTRQQSASDEV--WHRRLGHPHPQVLQ 480
Query: 367 HLFPDLFKNVNCSSLE-CESCVLAKNQRAPYYSQPYHASRPFYLIHSDVWGPSKITTQFG 543
L ++N +S CE+C L K+ R P+ S + ++RP +H D+WGPS IT+ G
Sbjct: 481 QLVKTNSISINKTSKSLCEACQLGKSTRLPFVSSSFTSNRPLERVHCDLWGPSPITSVQG 540
Query: 544 KRWFVTFIDDHT 579
R++ FID ++
Sbjct: 541 FRYYAVFIDHYS 552
>ref|NP_180042.1| putative retroelement pol polyprotein; protein id: At2g24660.1
[Arabidopsis thaliana] gi|25301674|pir||D84639 probable
retroelement pol polyprotein [imported] - Arabidopsis
thaliana gi|4572668|gb|AAD23883.1| putative retroelement
pol polyprotein [Arabidopsis thaliana]
Length = 1156
Score = 79.7 bits (195), Expect = 2e-14
Identities = 44/131 (33%), Positives = 62/131 (46%)
Frame = +1
Query: 181 KYDRISGKMIASAKMKDGLYYFEDTFRNKAAQGLCGMSCTSVRDQIMLWHNRLGHPNFQY 360
K DR S +I S + +DG+YY D K + V LWH RLGHP+F
Sbjct: 50 KLDRFSRTLIGSGEERDGVYYLTDVATAK-------IHTAKVSSDQALWHQRLGHPSFSV 102
Query: 361 LRHLFPDLFKNVNCSSLECESCVLAKNQRAPYYSQPYHASRPFYLIHSDVWGPSKITTQF 540
L L +++ S C+ C AK R + + F LIH DVWGP ++ +
Sbjct: 103 LSSLPVLTSSSLSVGSRSCDVCFRAKQTREVFPVSTNKSIECFSLIHCDVWGPYRVPSSC 162
Query: 541 GKRWFVTFIDD 573
G +F+T +DD
Sbjct: 163 GAVYFLTIVDD 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,996,043
Number of Sequences: 1393205
Number of extensions: 9476492
Number of successful extensions: 33625
Number of sequences better than 10.0: 460
Number of HSP's better than 10.0 without gapping: 32063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33323
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
