Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016976A_C01 KMC016976A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191795.1| putative protein; protein id: At3g62360.1 [Arab... 86 4e-16
dbj|BAB60938.1| putative pM5 collagenase [Oryza sativa (japonica... 79 5e-14
ref|XP_208520.1| hypothetical protein XP_208520 [Homo sapiens] g... 35 0.80
gb|AAC98738.1| unknown [Pseudomonas putida] 33 2.3
ref|NP_706533.1| high-affinity potassium-transporting ATPase A c... 32 5.2
>ref|NP_191795.1| putative protein; protein id: At3g62360.1 [Arabidopsis thaliana]
gi|11357986|pir||T48028 hypothetical protein T12C14.60 -
Arabidopsis thaliana gi|7340707|emb|CAB82950.1| putative
protein [Arabidopsis thaliana]
Length = 1227
Score = 85.5 bits (210), Expect = 4e-16
Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Frame = -3
Query: 552 VGPLRFRIV-DQLKQELTPAPVFPLIVGFLVVALFLSMPRLKDLYQATVDIPTPGLGGAS 376
+GPLR+ IV D QE+TPA + PL++G +ALFLS+PRLKD+YQATV I +PG ++
Sbjct: 1154 IGPLRYSIVADHQSQEVTPAAILPLVIGVSAIALFLSIPRLKDIYQATVGISSPGFTTSA 1213
Query: 375 KKDIRKPILRKKTY 334
K++ RK + RKKT+
Sbjct: 1214 KREPRKAVARKKTF 1227
>dbj|BAB60938.1| putative pM5 collagenase [Oryza sativa (japonica cultivar-group)]
gi|15623807|dbj|BAB67867.1| putative pM5 collagenase
[Oryza sativa (japonica cultivar-group)]
Length = 1193
Score = 78.6 bits (192), Expect = 5e-14
Identities = 43/73 (58%), Positives = 55/73 (74%), Gaps = 2/73 (2%)
Frame = -3
Query: 552 VGPLRFRIVDQL-KQELTPAPVFPLIVGFLVVALFLSMPRLKDLYQATVDIPTPGLGGAS 376
VGPL+++ ++ KQELTPAPVFPLIVG V+AL +SMPRLKDLYQ+ V + T G A
Sbjct: 1120 VGPLKYKTEERHHKQELTPAPVFPLIVGVSVIALVISMPRLKDLYQSAVGMTTLGSAAAP 1179
Query: 375 -KKDIRKPILRKK 340
KK+ RK I+RK+
Sbjct: 1180 IKKEPRKTIMRKR 1192
>ref|XP_208520.1| hypothetical protein XP_208520 [Homo sapiens]
gi|21755624|dbj|BAC04723.1| unnamed protein product
[Homo sapiens]
Length = 138
Score = 34.7 bits (78), Expect = 0.80
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 529 CRSAEAGVDSCTRVPPYCWISSCCAISQHA*VEGFVPSHGRHTYTRTWW 383
C S EAG +C P C+++SCC +S+H T + TWW
Sbjct: 75 CLSEEAGETACRASPGQCYVTSCC-LSRHC------------TCSLTWW 110
>gb|AAC98738.1| unknown [Pseudomonas putida]
Length = 545
Score = 33.1 bits (74), Expect = 2.3
Identities = 20/78 (25%), Positives = 37/78 (46%)
Frame = +1
Query: 220 CWHWLLHINKEEHLNLWENVRTAIKLAQLRDYAYL*ALVSLLSQYRLPNVFF*SPTKSWC 399
CW L EH+ + +++ T KL + Y YL ++ +SQ+ V +P
Sbjct: 460 CWTEL----GAEHVGIIQSLITTCKLHDINPYTYLVDVLQRISQHPASKVADLTPRLWKT 515
Query: 400 RYVYRGLVQILQPRHAEK 453
R+ L ++ PRH+++
Sbjct: 516 RFADNPLRSLIDPRHSDR 533
>ref|NP_706533.1| high-affinity potassium-transporting ATPase A chain [Shigella
flexneri 2a str. 301]
gi|24050842|gb|AAN42240.1|AE015091_1 high-affinity
potassium-transporting ATPase A chain [Shigella flexneri
2a str. 301]
Length = 605
Score = 32.0 bits (71), Expect = 5.2
Identities = 21/57 (36%), Positives = 26/57 (44%)
Frame = -3
Query: 525 DQLKQELTPAPVFPLIVGFLVVALFLSMPRLKDLYQATVDIPTPGLGGASKKDIRKP 355
DQ L A F LI FL+V + L+ P L + DIP PG G + R P
Sbjct: 42 DQCGGVLMAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTAGVERILFRLP 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,307,490
Number of Sequences: 1393205
Number of extensions: 9488573
Number of successful extensions: 20292
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20271
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
