Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016933A_C01 KMC016933A_c01
(800 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA16587.1| R27-2 protein [Plasmodium yoelii yoelii] 36 0.75
ref|NP_113486.1| DNA primase [Guillardia theta] gi|25396859|pir|... 33 4.9
ref|NP_702076.1| hypothetical protein [Plasmodium falciparum 3D7... 32 8.3
>gb|EAA16587.1| R27-2 protein [Plasmodium yoelii yoelii]
Length = 1986
Score = 35.8 bits (81), Expect = 0.75
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 8/48 (16%)
Frame = +2
Query: 425 NRYYNHLFTSVKNNNSSKHFN--------NIEEFNFEERTFSFKLKYY 544
N YY+H+ + +KN+N K +N I++FN + F K+KYY
Sbjct: 1573 NLYYSHIESVIKNDNLEKEYNKMIINFNSRIDKFNKKVEYFDEKIKYY 1620
>ref|NP_113486.1| DNA primase [Guillardia theta] gi|25396859|pir||F90111 DNA primase
[imported] - Guillardia theta nucleomorph
gi|12580737|emb|CAC27055.1| DNA primase [Guillardia
theta]
Length = 651
Score = 33.1 bits (74), Expect = 4.9
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 416 HRCNRYYNHLFTSVKNNNSSKHFNNIEEFNFEERTFSFKL-KYYVLSMKRT 565
H N ++ +T+ K++NS+ + NNIE F+ FKL K+Y ++K T
Sbjct: 121 HELNDFF---YTNTKSDNSNFNINNIEMSEFQTLNLYFKLDKFYHKNLKET 168
>ref|NP_702076.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497254|gb|AAN36800.1|AE014819_11 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2184
Score = 32.3 bits (72), Expect = 8.3
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Frame = +2
Query: 377 SKSNSVNVFQL*LHRCNRYYNH-----LFTSVKNNNSSKH-----FNNIEEFNFEERTFS 526
+K N N ++ + N Y N+ L + NNNS H FNN +E+N + F
Sbjct: 1074 NKGNGQNFVKMEYDKSNSYNNNNNLNILINNNNNNNSYFHMNTLEFNNSKEYNMSDENFI 1133
Query: 527 FKLK 538
+LK
Sbjct: 1134 MRLK 1137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,768,786
Number of Sequences: 1393205
Number of extensions: 10287137
Number of successful extensions: 27219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27120
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
