Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016906A_C01 KMC016906A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191233.1| putative protein; protein id: At3g56740.1, supp... 118 6e-26
dbj|BAA88548.1| unnamed protein product [Oryza sativa (japonica ... 97 1e-19
ref|NP_181649.2| unknown protein; protein id: At2g41160.1, suppo... 95 5e-19
ref|NP_808882.1| phosphoglycerate dehydrogenase like 1 [Homo sap... 46 4e-04
dbj|BAC11609.1| unnamed protein product [Homo sapiens] 46 4e-04
>ref|NP_191233.1| putative protein; protein id: At3g56740.1, supported by cDNA:
18436. [Arabidopsis thaliana] gi|11358438|pir||T51262
hypothetical protein T8M16_70 - Arabidopsis thaliana
gi|9662993|emb|CAC00737.1| putative protein [Arabidopsis
thaliana] gi|21553945|gb|AAM63026.1| unknown
[Arabidopsis thaliana] gi|28950711|gb|AAO63279.1|
At3g56740 [Arabidopsis thaliana]
Length = 293
Score = 118 bits (295), Expect = 6e-26
Identities = 65/92 (70%), Positives = 72/92 (77%), Gaps = 2/92 (2%)
Frame = -1
Query: 571 SFFSRLSLPSMGS--PRAPSTRNVVGNIPSYPARPVERNYPAPNQSAVEPSEDSIATLVS 398
SFFSRLS PS G+ P APS RN+VG I R ER+ PAP S+VEPSE++I TLVS
Sbjct: 203 SFFSRLSFPSFGNSPPPAPS-RNIVGTISPNTGRRAERSQPAPLPSSVEPSEEAITTLVS 261
Query: 397 MGFDRNSARQALVQARNDVNVATNILLEAQSH 302
MGFDRN+ARQALV ARNDVN ATNILLEAQSH
Sbjct: 262 MGFDRNAARQALVHARNDVNAATNILLEAQSH 293
>dbj|BAA88548.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|6721539|dbj|BAA89569.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 292
Score = 97.4 bits (241), Expect = 1e-19
Identities = 52/89 (58%), Positives = 65/89 (72%)
Frame = -1
Query: 571 SFFSRLSLPSMGSPRAPSTRNVVGNIPSYPARPVERNYPAPNQSAVEPSEDSIATLVSMG 392
SFF+R+ PS G PS R++VGN+ S +R V+ N P+ VEP E SIA LVSMG
Sbjct: 204 SFFARIFAPSSGGSSRPS-RSLVGNMSSRTSRAVQNNQPSGFAPVVEPPESSIAMLVSMG 262
Query: 391 FDRNSARQALVQARNDVNVATNILLEAQS 305
FD N+ARQAL++ARND+N ATNILLEAQ+
Sbjct: 263 FDGNAARQALMRARNDINTATNILLEAQT 291
>ref|NP_181649.2| unknown protein; protein id: At2g41160.1, supported by cDNA:
gi_19347847 [Arabidopsis thaliana]
gi|19347848|gb|AAL86004.1| unknown protein [Arabidopsis
thaliana] gi|22136996|gb|AAM91727.1| unknown protein
[Arabidopsis thaliana]
Length = 287
Score = 95.1 bits (235), Expect = 5e-19
Identities = 55/90 (61%), Positives = 61/90 (67%)
Frame = -1
Query: 571 SFFSRLSLPSMGSPRAPSTRNVVGNIPSYPARPVERNYPAPNQSAVEPSEDSIATLVSMG 392
S FSR SLPS+ S P R P+ R R Y AP S EPSE++IATLVSMG
Sbjct: 203 SLFSRFSLPSLSSHSQPPRRTS----PNL-GRQAVRAYRAPMPSTTEPSEEAIATLVSMG 257
Query: 391 FDRNSARQALVQARNDVNVATNILLEAQSH 302
FD+N+ARQALV ARNDVN ATNILLEA SH
Sbjct: 258 FDQNAARQALVHARNDVNAATNILLEAHSH 287
>ref|NP_808882.1| phosphoglycerate dehydrogenase like 1 [Homo sapiens]
gi|16549123|dbj|BAB70757.1| unnamed protein product
[Homo sapiens]
Length = 309
Score = 45.8 bits (107), Expect = 4e-04
Identities = 22/46 (47%), Positives = 30/46 (64%)
Frame = -1
Query: 451 PNQSAVEPSEDSIATLVSMGFDRNSARQALVQARNDVNVATNILLE 314
P +E SE+ +A L+ MGF R A +AL + ND+NVATN LL+
Sbjct: 263 PAAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 308
>dbj|BAC11609.1| unnamed protein product [Homo sapiens]
Length = 344
Score = 45.8 bits (107), Expect = 4e-04
Identities = 22/46 (47%), Positives = 30/46 (64%)
Frame = -1
Query: 451 PNQSAVEPSEDSIATLVSMGFDRNSARQALVQARNDVNVATNILLE 314
P +E SE+ +A L+ MGF R A +AL + ND+NVATN LL+
Sbjct: 298 PAAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,573,112
Number of Sequences: 1393205
Number of extensions: 10982746
Number of successful extensions: 31054
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 29911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31021
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
