Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016863A_C01 KMC016863A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197696.1| acetyl-CoA synthetase-like protein; protein id:... 162 3e-39
dbj|BAC41807.1| putative acetyl-CoA synthetase [Arabidopsis thal... 105 3e-22
ref|NP_175929.1| acetyl-CoA synthetase, putative; protein id: At... 105 3e-22
ref|NP_250687.1| probable AMP-binding enzyme [Pseudomonas aerugi... 42 0.005
ref|ZP_00086733.1| hypothetical protein [Pseudomonas fluorescens... 42 0.005
>ref|NP_197696.1| acetyl-CoA synthetase-like protein; protein id: At5g23050.1
[Arabidopsis thaliana] gi|9759363|dbj|BAB09822.1|
acetyl-CoA synthetase-like protein [Arabidopsis
thaliana]
Length = 668
Score = 162 bits (409), Expect = 3e-39
Identities = 71/106 (66%), Positives = 89/106 (82%)
Frame = +3
Query: 198 MLYYGCFKDYGPDPPAWIPDPKSAALTNVGRLLERRGKEFLGSAYKDPITSFSDFQKFSV 377
M+YYGC+KD+GPD PAWIPDPK A+LTNVG+LLE+RGKEFLG YK+P++SFS FQ+FSV
Sbjct: 1 MMYYGCYKDFGPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSFSSFQEFSV 60
Query: 378 SNPEVYWETVFEEMNISFSKPPECILRDNLPGEDRSSLPSGQWLPG 515
SNPEVYW+TV +E+NI FS PP+CIL + G++ P G+WLPG
Sbjct: 61 SNPEVYWKTVLDELNILFSVPPKCILEKDTSGDN----PGGKWLPG 102
>dbj|BAC41807.1| putative acetyl-CoA synthetase [Arabidopsis thaliana]
Length = 228
Score = 105 bits (262), Expect = 3e-22
Identities = 57/173 (32%), Positives = 89/173 (50%), Gaps = 6/173 (3%)
Frame = +3
Query: 12 KSLCSITVSDIESLGISRDAASTFHQRLTEIIGVHGAGSPAT-WQNIASSILNNPELPFS 188
KS+ ++ D G++ + A F + ++++I P W+ + + P P
Sbjct: 3 KSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHPHP 62
Query: 189 FHQMLYYGCFKDY-----GPDPPAWIPDPKSAALTNVGRLLERRGKEFLGSAYKDPITSF 353
HQ+LYY + ++ GP P W P + TN+G+L+E G LG +YK+P+ SF
Sbjct: 63 LHQLLYYSVYSNWDSSVHGP-PLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLESF 121
Query: 354 SDFQKFSVSNPEVYWETVFEEMNISFSKPPECILRDNLPGEDRSSLPSGQWLP 512
F++FSV +PEVYW V +E+++ F PP CIL S P G WLP
Sbjct: 122 ELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCIL--------NKSKPEGTWLP 166
>ref|NP_175929.1| acetyl-CoA synthetase, putative; protein id: At1g55320.1
[Arabidopsis thaliana] gi|25405817|pir||D96595 probable
acetyl-CoA synthetase, 45051-31547 [imported] -
Arabidopsis thaliana
gi|12323178|gb|AAG51574.1|AC027034_20 acetyl-CoA
synthetase, putative; 45051-31547 [Arabidopsis thaliana]
Length = 2655
Score = 105 bits (262), Expect = 3e-22
Identities = 57/173 (32%), Positives = 89/173 (50%), Gaps = 6/173 (3%)
Frame = +3
Query: 12 KSLCSITVSDIESLGISRDAASTFHQRLTEIIGVHGAGSPAT-WQNIASSILNNPELPFS 188
KS+ ++ D G++ + A F + ++++I P W+ + + P P
Sbjct: 3 KSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHPHP 62
Query: 189 FHQMLYYGCFKDY-----GPDPPAWIPDPKSAALTNVGRLLERRGKEFLGSAYKDPITSF 353
HQ+LYY + ++ GP P W P + TN+G+L+E G LG +YK+P+ SF
Sbjct: 63 LHQLLYYSVYSNWDSSVHGP-PLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLESF 121
Query: 354 SDFQKFSVSNPEVYWETVFEEMNISFSKPPECILRDNLPGEDRSSLPSGQWLP 512
F++FSV +PEVYW V +E+++ F PP CIL S P G WLP
Sbjct: 122 ELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCIL--------NKSKPEGTWLP 166
>ref|NP_250687.1| probable AMP-binding enzyme [Pseudomonas aeruginosa PA01]
gi|11350988|pir||G83395 probable AMP-binding enzyme
PA1997 [imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9947999|gb|AAG05385.1|AE004626_4 probable AMP-binding
enzyme [Pseudomonas aeruginosa PAO1]
Length = 651
Score = 41.6 bits (96), Expect = 0.005
Identities = 19/92 (20%), Positives = 39/92 (41%)
Frame = +3
Query: 240 PAWIPDPKSAALTNVGRLLERRGKEFLGSAYKDPITSFSDFQKFSVSNPEVYWETVFEEM 419
P W P + A + + + F+ + + + +SV E +W+ + +
Sbjct: 4 PLWSPSAERIAASRMEAF-----RRFVNQRHALGLVDYPALHAWSVQRREAFWQAIVDFF 58
Query: 420 NISFSKPPECILRDNLPGEDRSSLPSGQWLPG 515
+ F +PP +L E+ + +PS +W PG
Sbjct: 59 EVRFQQPPRAVL------EEGAQMPSARWFPG 84
>ref|ZP_00086733.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 651
Score = 41.6 bits (96), Expect = 0.005
Identities = 20/90 (22%), Positives = 38/90 (42%)
Frame = +3
Query: 246 WIPDPKSAALTNVGRLLERRGKEFLGSAYKDPITSFSDFQKFSVSNPEVYWETVFEEMNI 425
W PD K A + + + F+ + + + ++S+ E +W+ + + I
Sbjct: 6 WQPDAKRIARSRMDGF-----RRFINQRHHLKLDDYPALHQWSIDQREAFWQAIVDFFGI 60
Query: 426 SFSKPPECILRDNLPGEDRSSLPSGQWLPG 515
SF P+ +LR L +P +W PG
Sbjct: 61 SFHTQPDAVLRGGL------KMPGAEWFPG 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,464,506
Number of Sequences: 1393205
Number of extensions: 11745872
Number of successful extensions: 31577
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 30603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31565
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
