Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016851A_C01 KMC016851A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_029426.1| expressed protein; protein id: At2g28390.1, sup... 57 2e-07
dbj|BAC30356.1| unnamed protein product [Mus musculus] 32 4.0
gb|AAH39627.1| Similar to hypothetical protein FLJ11323 [Mus mus... 32 4.0
>ref|NP_029426.1| expressed protein; protein id: At2g28390.1, supported by cDNA:
gi_15983790 [Arabidopsis thaliana]
gi|15983791|gb|AAL10492.1| At2g28390/T1B3.9 [Arabidopsis
thaliana] gi|20197735|gb|AAD20687.2| expressed protein
[Arabidopsis thaliana] gi|22137018|gb|AAM91354.1|
At2g28390/T1B3.9 [Arabidopsis thaliana]
gi|26451129|dbj|BAC42668.1| unknown protein [Arabidopsis
thaliana]
Length = 607
Score = 57.0 bits (136), Expect = 2e-07
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = -1
Query: 192 QALAIKTCNHVCQWIKDVENEIFLLGASPFSW 97
+A+AIK CN VCQ +KDVENE+FL GASPFSW
Sbjct: 576 KAMAIKICNQVCQRVKDVENEVFLQGASPFSW 607
>dbj|BAC30356.1| unnamed protein product [Mus musculus]
Length = 300
Score = 32.3 bits (72), Expect = 4.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 222 NVCVVHIEYMQALAIKTCNHVCQWIKDVENEIFLLGASPF 103
N+C VH+ Y +AL T + +W++ E+ +L F
Sbjct: 94 NLCFVHMMYTKALVEDTLTEIAEWLQSHPREVVILACRNF 133
>gb|AAH39627.1| Similar to hypothetical protein FLJ11323 [Mus musculus]
Length = 345
Score = 32.3 bits (72), Expect = 4.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 222 NVCVVHIEYMQALAIKTCNHVCQWIKDVENEIFLLGASPF 103
N+C VH+ Y +AL T + +W++ E+ +L F
Sbjct: 139 NLCFVHMMYTKALVEDTLTEIAEWLQSHPREVVILACRNF 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,596,574
Number of Sequences: 1393205
Number of extensions: 8425360
Number of successful extensions: 15172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15161
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
