Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016813A_C01 KMC016813A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180966.1| putative membrane transporter; protein id: At2g... 159 3e-38
gb|AAK59632.1| putative membrane transporter protein [Arabidopsi... 159 3e-38
dbj|BAB61205.1| putative permease 1 [Oryza sativa (japonica cult... 146 2e-34
ref|NP_178636.1| putative membrane transporter; protein id: At2g... 129 3e-29
ref|NP_201094.1| permease 1 - like protein; protein id: At5g6289... 109 3e-23
>ref|NP_180966.1| putative membrane transporter; protein id: At2g34190.1, supported
by cDNA: gi_14334907 [Arabidopsis thaliana]
gi|7488005|pir||T02307 probable membrane transporter
At2g34190 [imported] - Arabidopsis thaliana
gi|3337350|gb|AAC27395.1| putative membrane transporter
[Arabidopsis thaliana] gi|23297127|gb|AAN13099.1|
putative membrane transporter [Arabidopsis thaliana]
Length = 524
Score = 159 bits (401), Expect = 3e-38
Identities = 69/89 (77%), Positives = 80/89 (89%)
Frame = -1
Query: 568 FREYTIRPLHVPAHTKXGWFNDFLNTIFYSPPTVALIVAVFLDNTLDYKDSAKDRGMPWW 389
FR+++++ LH PAHT GWFNDFLNTIF S P VAL+VAVFLDNTLDYK++A+DRG+PWW
Sbjct: 436 FRDFSMKALHGPAHTNAGWFNDFLNTIFLSSPMVALMVAVFLDNTLDYKETARDRGLPWW 495
Query: 388 AKFRAFKADSRNEEFYSLPFNLNRFFPPS 302
AKFR FK DSRNEEFY+LPFNLNRFFPPS
Sbjct: 496 AKFRTFKGDSRNEEFYTLPFNLNRFFPPS 524
>gb|AAK59632.1| putative membrane transporter protein [Arabidopsis thaliana]
Length = 524
Score = 159 bits (401), Expect = 3e-38
Identities = 69/89 (77%), Positives = 80/89 (89%)
Frame = -1
Query: 568 FREYTIRPLHVPAHTKXGWFNDFLNTIFYSPPTVALIVAVFLDNTLDYKDSAKDRGMPWW 389
FR+++++ LH PAHT GWFNDFLNTIF S P VAL+VAVFLDNTLDYK++A+DRG+PWW
Sbjct: 436 FRDFSMKALHGPAHTNAGWFNDFLNTIFLSSPMVALMVAVFLDNTLDYKETARDRGLPWW 495
Query: 388 AKFRAFKADSRNEEFYSLPFNLNRFFPPS 302
AKFR FK DSRNEEFY+LPFNLNRFFPPS
Sbjct: 496 AKFRTFKGDSRNEEFYTLPFNLNRFFPPS 524
>dbj|BAB61205.1| putative permease 1 [Oryza sativa (japonica cultivar-group)]
gi|20804662|dbj|BAB92350.1| putative permease 1 [Oryza
sativa (japonica cultivar-group)]
Length = 524
Score = 146 bits (369), Expect = 2e-34
Identities = 65/89 (73%), Positives = 75/89 (84%)
Frame = -1
Query: 568 FREYTIRPLHVPAHTKXGWFNDFLNTIFYSPPTVALIVAVFLDNTLDYKDSAKDRGMPWW 389
F Y++ PAHTK GWFND++NTIF SPPTV LIVAVFLDNTL+ K++AKDRGMPWW
Sbjct: 436 FFRYSMAAQRGPAHTKAGWFNDYINTIFSSPPTVGLIVAVFLDNTLEVKNAAKDRGMPWW 495
Query: 388 AKFRAFKADSRNEEFYSLPFNLNRFFPPS 302
FR+FK D+R+EEFYSLPFNLNRFFPPS
Sbjct: 496 VPFRSFKGDARSEEFYSLPFNLNRFFPPS 524
>ref|NP_178636.1| putative membrane transporter; protein id: At2g05760.1 [Arabidopsis
thaliana] gi|25309276|pir||D84471 probable membrane
transporter [imported] - Arabidopsis thaliana
gi|4662639|gb|AAD26910.1| putative membrane transporter
[Arabidopsis thaliana]
Length = 520
Score = 129 bits (323), Expect = 3e-29
Identities = 54/76 (71%), Positives = 64/76 (84%)
Frame = -1
Query: 529 HTKXGWFNDFLNTIFYSPPTVALIVAVFLDNTLDYKDSAKDRGMPWWAKFRAFKADSRNE 350
HT GWFN FLNT+F SP TV LI+AVF+DNT++ + S KDRGMPWW KFR F+ D+RNE
Sbjct: 445 HTNAGWFNAFLNTLFMSPATVGLIIAVFMDNTMEVERSKKDRGMPWWVKFRTFRGDNRNE 504
Query: 349 EFYSLPFNLNRFFPPS 302
EFY+LPFNLNRFFPP+
Sbjct: 505 EFYTLPFNLNRFFPPT 520
>ref|NP_201094.1| permease 1 - like protein; protein id: At5g62890.1 [Arabidopsis
thaliana] gi|10177467|dbj|BAB10858.1| permease 1
[Arabidopsis thaliana]
gi|21326025|gb|AAM47573.1|AF466198_1 putative permease 1
[Arabidopsis thaliana]
Length = 532
Score = 109 bits (272), Expect = 3e-23
Identities = 54/89 (60%), Positives = 62/89 (68%), Gaps = 2/89 (2%)
Frame = -1
Query: 568 FREYTIRPLHVPAHTKXGWFNDFLNTIFYSPPTVALIVAVFLDNTLDYKDSA--KDRGMP 395
F EYT + P HT WFND +N F S P VA VA FLDNTL KDS+ KDRG
Sbjct: 442 FNEYTAIKGYGPVHTGARWFNDMVNVPFSSEPFVAGSVAFFLDNTLHKKDSSIRKDRGKH 501
Query: 394 WWAKFRAFKADSRNEEFYSLPFNLNRFFP 308
WW KFR+FK D+R+EEFYSLPFNLN++FP
Sbjct: 502 WWDKFRSFKGDTRSEEFYSLPFNLNKYFP 530
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,074,732
Number of Sequences: 1393205
Number of extensions: 9125594
Number of successful extensions: 38468
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 36197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38439
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
