Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016808A_C01 KMC016808A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51310 RNA helicase RH28 [imported] - Arabidopsis thaliana ... 37 0.12
ref|NP_561370.1| hypothetical protein [Clostridium perfringens] ... 31 8.7
emb|CAD21059.1| related to transcription factor KCS1 [Neurospora... 31 8.7
>pir||T51310 RNA helicase RH28 [imported] - Arabidopsis thaliana
gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis
thaliana]
Length = 789
Score = 37.4 bits (85), Expect = 0.12
Identities = 17/38 (44%), Positives = 28/38 (72%), Gaps = 4/38 (10%)
Frame = -2
Query: 551 FQTEIKDRKPRKGGSGAGKKP----KSSFKSKSRYKRK 450
F++++ ++K +GG+ A KP K+SFKSK+RYKR+
Sbjct: 752 FKSDMGEKKQGRGGAAAAAKPRTKSKNSFKSKARYKRR 789
>ref|NP_561370.1| hypothetical protein [Clostridium perfringens]
gi|18144112|dbj|BAB80160.1| hypothetical protein
[Clostridium perfringens str. 13]
Length = 606
Score = 31.2 bits (69), Expect = 8.7
Identities = 16/31 (51%), Positives = 19/31 (60%)
Frame = -1
Query: 381 VIALLIPYLLSYWRSLDELPR*IAADSFGVF 289
+ LL Y+L Y SLDELPR + A GVF
Sbjct: 113 IFLLLYVYMLEYPISLDELPRRLVAMGVGVF 143
>emb|CAD21059.1| related to transcription factor KCS1 [Neurospora crassa]
gi|28917903|gb|EAA27589.1| hypothetical protein
[Neurospora crassa]
Length = 1466
Score = 31.2 bits (69), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +2
Query: 245 HHSRH**HTGHHGHPKTPKESAAIHRGSSSND 340
HHSRH H HH H + P+E+ H+G +
Sbjct: 699 HHSRH--HDHHHHHHRHPEEAIHDHQGEPKEE 728
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,837,478
Number of Sequences: 1393205
Number of extensions: 9221258
Number of successful extensions: 26484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26317
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
