Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016794A_C01 KMC016794A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188488.1| hypothetical protein; protein id: At3g18580.1 [... 97 1e-19
dbj|BAB90471.1| P0510C12.16 [Oryza sativa (japonica cultivar-gro... 89 3e-17
gb|AAO42186.1| unknown protein [Arabidopsis thaliana] gi|2882740... 43 0.002
gb|AAC35538.1| contains similarity to the single-strand binding ... 42 0.005
ref|NP_192844.1| putative protein; protein id: At4g11060.1 [Arab... 42 0.005
>ref|NP_188488.1| hypothetical protein; protein id: At3g18580.1 [Arabidopsis
thaliana] gi|9294319|dbj|BAB02216.1| contains similarity
to unknown protein~emb|CAB43041.1~gene_id:K24M9.7
[Arabidopsis thaliana]
Length = 217
Score = 97.1 bits (240), Expect = 1e-19
Identities = 45/75 (60%), Positives = 59/75 (78%)
Frame = -2
Query: 495 PERLGTLVMTHATPGSTLYVEGNLESKVFSDPTTGLVRRIREVSVRRNGRVVFLGQGGDA 316
PERL LV+ + PG+ +Y+EGNLE+K+F+DP TGLVRRIREV++RRNGRVVFLG+ GD
Sbjct: 144 PERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDM 203
Query: 315 DADTQPNDLKAVGYY 271
+ +L+ VGYY
Sbjct: 204 QQPSSA-ELRGVGYY 217
>dbj|BAB90471.1| P0510C12.16 [Oryza sativa (japonica cultivar-group)]
Length = 218
Score = 89.0 bits (219), Expect = 3e-17
Identities = 44/75 (58%), Positives = 56/75 (74%)
Frame = -2
Query: 495 PERLGTLVMTHATPGSTLYVEGNLESKVFSDPTTGLVRRIREVSVRRNGRVVFLGQGGDA 316
PERLG+L + H GS LY+EGNLE+KVFSDP TGLVRRIRE++VR NGR++FLG +A
Sbjct: 147 PERLGSLALKHVKTGSVLYLEGNLETKVFSDPITGLVRRIREIAVRSNGRLLFLGNDCNA 206
Query: 315 DADTQPNDLKAVGYY 271
+ + K VGY+
Sbjct: 207 ---PKLGEAKGVGYF 218
>gb|AAO42186.1| unknown protein [Arabidopsis thaliana] gi|28827408|gb|AAO50548.1|
unknown protein [Arabidopsis thaliana]
Length = 201
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/56 (33%), Positives = 36/56 (63%)
Frame = -2
Query: 492 ERLGTLVMTHATPGSTLYVEGNLESKVFSDPTTGLVRRIREVSVRRNGRVVFLGQG 325
E LG+ + S++YVEG++E++V++D + V+ I E+ VRR+G++ + G
Sbjct: 130 EVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIKYG 185
>gb|AAC35538.1| contains similarity to the single-strand binding proteins family
(Pfam: SSB.hmm, score: 24.02) [Arabidopsis thaliana]
Length = 150
Score = 41.6 bits (96), Expect = 0.005
Identities = 19/53 (35%), Positives = 34/53 (63%)
Frame = -2
Query: 492 ERLGTLVMTHATPGSTLYVEGNLESKVFSDPTTGLVRRIREVSVRRNGRVVFL 334
E LG+ + S++YVEG++E++V++D + V+ I E+ VRR+G V +
Sbjct: 26 EVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGMYVHI 78
>ref|NP_192844.1| putative protein; protein id: At4g11060.1 [Arabidopsis thaliana]
gi|7487337|pir||T08185 hypothetical protein T22B4.40 -
Arabidopsis thaliana gi|4850285|emb|CAB43041.1| putative
protein [Arabidopsis thaliana]
gi|7267804|emb|CAB81207.1| putative protein [Arabidopsis
thaliana]
Length = 254
Score = 41.6 bits (96), Expect = 0.005
Identities = 19/53 (35%), Positives = 34/53 (63%)
Frame = -2
Query: 492 ERLGTLVMTHATPGSTLYVEGNLESKVFSDPTTGLVRRIREVSVRRNGRVVFL 334
E LG+ + S++YVEG++E++V++D + V+ I E+ VRR+G V +
Sbjct: 130 EVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGMYVHI 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,665,136
Number of Sequences: 1393205
Number of extensions: 8632972
Number of successful extensions: 30481
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 29533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30419
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
