Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016553A_C01 KMC016553A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL65853.1|AF346729_1 AgrB [Staphylococcus xylosus] 32 9.8
gb|EAA16573.1| hypothetical protein [Plasmodium yoelii yoelii] 32 9.8
>gb|AAL65853.1|AF346729_1 AgrB [Staphylococcus xylosus]
Length = 108
Score = 31.6 bits (70), Expect = 9.8
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = -1
Query: 445 DLVFTLFVLWLEHFLSLFGLFSYDLVRLILWFSVQVFVIVN*RENQCPPPPIIIKKKKRE 266
+L+F + + WL ++++ LF Y L I+ F V VI E + P PI +KK+K+E
Sbjct: 6 NLLFFVLLPWLLGYMNVSSLFMYSLA--IIGF--VVLVIYAPAETKKQPIPIRLKKRKKE 61
>gb|EAA16573.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 452
Score = 31.6 bits (70), Expect = 9.8
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = +2
Query: 272 FFFFDNNRGGGALVFPLIDYDKYLHTKPKNQTNQIIGK 385
FFF DNN GG+ + +I D+ ++ +N TN++ K
Sbjct: 343 FFFNDNNENGGSNIANMISNDQNYNSYSENFTNKLSNK 380
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,433,101
Number of Sequences: 1393205
Number of extensions: 11889860
Number of successful extensions: 31524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31338
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)