Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016537A_C01 KMC016537A_c01
(769 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195447.1| putative protein; protein id: At4g37300.1, supp... 94 3e-18
gb|EAA21835.1| CCAAT-box DNA binding protein subunit B [Plasmodi... 39 0.11
gb|AAO51932.1| similar to Derepression of GCN4 expression; Gcn2p... 35 0.90
gb|EAA17720.1| ring-infested erythrocyte surface antigen, putati... 34 2.0
ref|NP_701379.1| hypothetical protein [Plasmodium falciparum 3D7... 34 2.0
>ref|NP_195447.1| putative protein; protein id: At4g37300.1, supported by cDNA:
gi_13877858, supported by cDNA: gi_14517511, supported
by cDNA: gi_15809769, supported by cDNA: gi_17065601
[Arabidopsis thaliana] gi|25372664|pir||G85440
hypothetical protein AT4g37300 [imported] - Arabidopsis
thaliana gi|2464852|emb|CAB16754.1| putative protein
[Arabidopsis thaliana] gi|7270713|emb|CAB80396.1|
putative protein [Arabidopsis thaliana]
gi|13877859|gb|AAK44007.1|AF370192_1 unknown protein
[Arabidopsis thaliana] gi|14517512|gb|AAK62646.1|
AT4g37300/C7A10_60 [Arabidopsis thaliana]
gi|15809770|gb|AAL06813.1| AT4g37300/C7A10_60
[Arabidopsis thaliana] gi|17065602|gb|AAL33781.1|
unknown protein [Arabidopsis thaliana]
Length = 173
Score = 93.6 bits (231), Expect = 3e-18
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 9/152 (5%)
Frame = -1
Query: 763 QTREYFEEGAPKRHTKPQRSEYSSQYVDNINGVSNDSTPEMLQFQRLENDPQEKKLVY-N 587
Q R F+ APKR TKP RSE + + D PE +FQ L++ K L +
Sbjct: 24 QIRADFDSLAPKRPTKPTRSEPGFPGSFSASDKITDH-PEADKFQSLQSQTHGKVLGEGD 82
Query: 586 GNQVAEEFVETEYYKDLNNVDKHHHTTGKGFIQVDKSGTGFHIE-----PDNDTGHHHSS 422
+ V +EF+ETEYY +L +DK HHTTG GFI V K G E D G
Sbjct: 83 SSAVQDEFLETEYYSNLTAIDKQHHTTGSGFINVVKEDNGEESEAVTAAAIGDGGEKAVY 142
Query: 421 KGNPATNEWVPAPSTEDVFNSD---KPSRSDN 335
+ NPATNEW+PA TE+ F+S+ KP+RS++
Sbjct: 143 RSNPATNEWIPA--TEEDFDSESSSKPNRSES 172
>gb|EAA21835.1| CCAAT-box DNA binding protein subunit B [Plasmodium yoelii yoelii]
Length = 998
Score = 38.5 bits (88), Expect = 0.11
Identities = 38/133 (28%), Positives = 55/133 (40%), Gaps = 22/133 (16%)
Frame = -1
Query: 745 EEGAPKRHTKPQRSEYSSQYVDNINGV--SNDSTPEMLQFQRLENDPQEKKLV------- 593
E+ + K + K +RS SS + N N ND E + Q +END ++KK
Sbjct: 339 EDRSKKEYRKNERSN-SSNFSQNGNEFCKENDEKKEKYETQSVENDEKKKKYETQSVEND 397
Query: 592 --------YNGNQVAEEFVETEYYKDLNN---VDKHHHTTGKGFIQVDKS--GTGFHIEP 452
+N + E Y +D NN +DK +H G+ I D S H E
Sbjct: 398 EKKKNSDHFNDSGKGETTNHNNYKQDHNNNYYMDKEYH-DGRKLINKDYSIYDEDIHFEN 456
Query: 451 DNDTGHHHSSKGN 413
D +H S KG+
Sbjct: 457 DKKYNNHTSDKGS 469
>gb|AAO51932.1| similar to Derepression of GCN4 expression; Gcn2p [Saccharomyces
cerevisiae] [Dictyostelium discoideum]
Length = 1700
Score = 35.4 bits (80), Expect = 0.90
Identities = 27/97 (27%), Positives = 46/97 (46%)
Frame = -1
Query: 694 SQYVDNINGVSNDSTPEMLQFQRLENDPQEKKLVYNGNQVAEEFVETEYYKDLNNVDKHH 515
S NIN VSN + +L +++ Q +L ++ + F+ETE+ +L + KHH
Sbjct: 1164 STSTSNINKVSNKTGKSIL----MDDSGQLLELRHDLRVSFKSFIETEFL-NLGDHYKHH 1218
Query: 514 HTTGKGFIQVDKSGTGFHIEPDNDTGHHHSSKGNPAT 404
H + ++ D S G +++ HH K N T
Sbjct: 1219 HQQ-QNDVRHDNSSNGNSNNNNSNDRHHDQDKSNTTT 1254
>gb|EAA17720.1| ring-infested erythrocyte surface antigen, putative [Plasmodium
yoelii yoelii]
Length = 515
Score = 34.3 bits (77), Expect = 2.0
Identities = 18/77 (23%), Positives = 37/77 (47%)
Frame = -1
Query: 706 SEYSSQYVDNINGVSNDSTPEMLQFQRLENDPQEKKLVYNGNQVAEEFVETEYYKDLNNV 527
+E S +Y +NIN E + + + E +L + ++ EE++E Y++ N
Sbjct: 290 NEMSEKYDENINENEMGEKEENINENEMSEEYDENQLEDSYSKDNEEYIEKNVYENNRNR 349
Query: 526 DKHHHTTGKGFIQVDKS 476
++H+ K I +K+
Sbjct: 350 IEYHNNINKNIISFEKN 366
>ref|NP_701379.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496545|gb|AAN36103.1|AE014844_14 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1129
Score = 34.3 bits (77), Expect = 2.0
Identities = 27/137 (19%), Positives = 57/137 (40%), Gaps = 7/137 (5%)
Frame = -1
Query: 718 KPQRSEYSSQYVDNINGVSNDSTPEMLQFQRLENDPQEKKLVYNGNQVAEEFVETEYYKD 539
K + +E +++ ++ +N N+ EM + EN+ + + N V E +
Sbjct: 844 KEENNEVNNEEMNEVNNEVNNE--EMNEVNNEENNEENNEENNEENNEEMNEVNNEENNE 901
Query: 538 LNNVDKHH-------HTTGKGFIQVDKSGTGFHIEPDNDTGHHHSSKGNPATNEWVPAPS 380
+NN + + KG +++ G E +N+T ++KGN TN+
Sbjct: 902 VNNEENNEVNNETNKEENNKGNDEINNEGNN---EENNETNKEENNKGNDETNKEENNKG 958
Query: 379 TEDVFNSDKPSRSDN*N 329
+++ N +D+ N
Sbjct: 959 NDEINNEGNNKGNDDMN 975
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 696,758,650
Number of Sequences: 1393205
Number of extensions: 15978851
Number of successful extensions: 43686
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 41828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43622
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
