Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016509A_C01 KMC016509A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_043982.1| MC031L [Molluscum contagiosum virus] gi|7521313... 36 0.20
gb|AAB57945.1| similar to variola E1L and vaccinia E1L [Molluscu... 36 0.20
ref|NP_201332.1| unknown protein; protein id: At5g65290.1 [Arabi... 32 2.9
>ref|NP_043982.1| MC031L [Molluscum contagiosum virus] gi|7521313|pir||T30633
probable polynucleotide adenylyltransferase (EC
2.7.7.19) catalytic chain - Molluscum contagiosum virus
1 gi|1491974|gb|AAC55159.1| MC031L [Molluscum
contagiosum virus subtype 1]
Length = 470
Score = 36.2 bits (82), Expect = 0.20
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +2
Query: 137 LSASFCVIDF*SEVCVADNSIFRLHWGLMYIFFSKHSIQKFTISIHDIMDLHSQSYWTLH 316
L+A V+DF + NS+F +H G+MY +FS + + +IHD+ + ++ TL+
Sbjct: 363 LNADAAVVDFEA----VSNSVFLIHQGIMYTYFSNTVLLRSEDAIHDVSERAVCAHITLY 418
>gb|AAB57945.1| similar to variola E1L and vaccinia E1L [Molluscum contagiosum
virus subtype 1]
Length = 114
Score = 36.2 bits (82), Expect = 0.20
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +2
Query: 137 LSASFCVIDF*SEVCVADNSIFRLHWGLMYIFFSKHSIQKFTISIHDIMDLHSQSYWTLH 316
L+A V+DF + NS+F +H G+MY +FS + + +IHD+ + ++ TL+
Sbjct: 7 LNADAAVVDFEA----VSNSVFLIHQGIMYTYFSNTVLLRSEDAIHDVSERAVCAHITLY 62
>ref|NP_201332.1| unknown protein; protein id: At5g65290.1 [Arabidopsis thaliana]
gi|9759609|dbj|BAB11551.1| gene_id:MNA5.1~unknown
protein [Arabidopsis thaliana]
Length = 733
Score = 32.3 bits (72), Expect = 2.9
Identities = 15/29 (51%), Positives = 21/29 (71%)
Frame = -3
Query: 466 SSSESLDEIFQRLKGTSLDQNTYNEED*E 380
S +SLDEIFQRLK S++ + Y ++D E
Sbjct: 704 SVPQSLDEIFQRLKNRSVEHSPYLDDDDE 732
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,753,310
Number of Sequences: 1393205
Number of extensions: 8230469
Number of successful extensions: 16019
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16016
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
