Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016506A_C01 KMC016506A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P04929|HRPX_PLALO HISTIDINE-RICH GLYCOPROTEIN PRECURSOR gi|72... 35 0.38
pir||A54523 histidine-rich protein - Plasmodium lophurae (fragme... 35 0.49
gb|EAA14755.1| ebiP5212 [Anopheles gambiae str. PEST] 35 0.64
pir||S14983 extensin class I (clone w10-1 L) - tomato (fragment) 34 0.84
ref|XP_205649.1| similar to DNA-directed RNA polymerase II large... 34 0.84
>sp|P04929|HRPX_PLALO HISTIDINE-RICH GLYCOPROTEIN PRECURSOR gi|72400|pir||KGZQHL
histidine-rich glycoprotein precursor - Plasmodium
lophurae gi|9999|emb|CAA25698.1| histidine-rich protein
[Plasmodium lophurae] gi|224316|prf||1101401A
protein,His rich
Length = 351
Score = 35.4 bits (80), Expect = 0.38
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 355 PHHHLRSQSPHHHIHLSSALCHCHHQH 435
PHHH PHHH HL H HH H
Sbjct: 100 PHHHHHHHPPHHHHHLG----HHHHHH 122
Score = 35.0 bits (79), Expect = 0.49
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH +PHHH H A H HH H
Sbjct: 176 HHHHHHHAPHHHHHHHHAPHHHHHHH 201
Score = 35.0 bits (79), Expect = 0.49
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH +PHHH H A H HH H
Sbjct: 186 HHHHHHHAPHHHHHHHHAPHHHHHHH 211
Score = 35.0 bits (79), Expect = 0.49
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH +PHHH H A H HH H
Sbjct: 196 HHHHHHHAPHHHHHHHHAPHHHHHHH 221
Score = 33.5 bits (75), Expect = 1.4
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH +PHHH H H HH H
Sbjct: 206 HHHHHHHAPHHHHHHHHGHHHHHHHH 231
Score = 32.3 bits (72), Expect = 3.2
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = +1
Query: 358 HHHL---RSQSPHHHIHLSSALCHCHHQH 435
HHHL +PHHH H A H HH H
Sbjct: 163 HHHLGYHHHHAPHHHHHHHHAPHHHHHHH 191
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH + HHH H A H HH H
Sbjct: 316 HHHHHHDAHHHHHHHHDAHHHHHHHH 341
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH + HHH H A H HH H
Sbjct: 306 HHHHHHDAHHHHHHHHDAHHHHHHHH 331
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH HHH H A H HH H
Sbjct: 296 HHHHHHHDAHHHHHHHDAHHHHHHHH 321
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH + HHH H A H HH H
Sbjct: 277 HHHHHHDAHHHHHHHHDAHHHHHHHH 302
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH + HHH H A H HH H
Sbjct: 267 HHHHHHDAHHHHHHHHDAHHHHHHHH 292
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH + HHH H A H HH H
Sbjct: 257 HHHHHHDAHHHHHHHHDAHHHHHHHH 282
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH + HHH H A H HH H
Sbjct: 247 HHHHHHDAHHHHHHHHDAHHHHHHHH 272
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH + HHH H A H HH H
Sbjct: 326 HHHHHHDAHHHHHHHHDAHHHHHHHH 351
Score = 30.8 bits (68), Expect = 9.3
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 355 PHHHLRSQSPHHHIHLSSALCHCHHQH 435
PHHH HHH H H HH H
Sbjct: 214 PHHHHHHHHGHHHHHHHHHGHHHHHHH 240
>pir||A54523 histidine-rich protein - Plasmodium lophurae (fragment)
gi|552196|gb|AAA29616.1| histidine-rich protein
[Plasmodium lophurae]
Length = 140
Score = 35.0 bits (79), Expect = 0.49
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH +PHHH H A H HH H
Sbjct: 20 HHHHHHHAPHHHHHHHHAPHHHHHHH 45
Score = 35.0 bits (79), Expect = 0.49
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH +PHHH H A H HH H
Sbjct: 10 HHHHHHHAPHHHHHHHHAPHHHHHHH 35
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHH 429
HHH +PHHH H A H HH
Sbjct: 30 HHHHHHHAPHHHHHHHHAPHHHHH 53
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH + HHH H A H HH H
Sbjct: 95 HHHHHHDAHHHHHHHHDAHHHHHHHH 120
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH + HHH H A H HH H
Sbjct: 105 HHHHHHDAHHHHHHHHDAHHHHHHHH 130
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH + HHH H A H HH H
Sbjct: 115 HHHHHHDAHHHHHHHHDAHHHHHHHH 140
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 361 HHLRSQSPHHHIHLSSALCHCHHQH 435
HH +PHHH H A H HH H
Sbjct: 1 HHHHHHAPHHHHHHHHAPHHHHHHH 25
Score = 32.0 bits (71), Expect = 4.2
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH HHH H A H HH H
Sbjct: 85 HHHHHHHDAHHHHHHHDAHHHHHHHH 110
>gb|EAA14755.1| ebiP5212 [Anopheles gambiae str. PEST]
Length = 876
Score = 34.7 bits (78), Expect = 0.64
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 355 PHHHLRSQSPHHHIHLSSALCHCHHQHVQS--*PCI*GH--IHP 474
PHHH Q HHH HLSS HHQH S P GH +HP
Sbjct: 382 PHHHHLQQQQHHH-HLSS----LHHQHGSSLLGPVATGHGQLHP 420
>pir||S14983 extensin class I (clone w10-1 L) - tomato (fragment)
Length = 130
Score = 34.3 bits (77), Expect = 0.84
Identities = 14/26 (53%), Positives = 17/26 (64%)
Frame = +1
Query: 358 HHHLRSQSPHHHIHLSSALCHCHHQH 435
HHH Q +HH HLS++L H HH H
Sbjct: 37 HHH---QGIYHHRHLSTSLLHHHHHH 59
>ref|XP_205649.1| similar to DNA-directed RNA polymerase II largest subunit (RPB1)
[Mus musculus]
Length = 402
Score = 34.3 bits (77), Expect = 0.84
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
+ HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 89 ESHHVYKPTSPCESHHVYKPTSPCELHHMYQPTSPCESHHVYQPTSPC 136
Score = 34.3 bits (77), Expect = 0.84
Identities = 16/53 (30%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Frame = +1
Query: 337 DKLREQPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
D L + HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 36 DFLNCKSHHVYKPTSPCKSHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPC 88
Score = 34.3 bits (77), Expect = 0.84
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
+ HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 221 ESHHVYKPTSPCESHHVYKPTSPCELHHMYQPTSPCESHHVYQPTSPC 268
Score = 33.9 bits (76), Expect = 1.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPCLL 495
+ HH + SP HH++ ++ C HH + + PC H++ PC L
Sbjct: 197 ESHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPCEL 246
Score = 33.9 bits (76), Expect = 1.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPCLL 495
+ HH + SP HH++ ++ C HH + + PC H++ PC L
Sbjct: 65 ESHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPCEL 114
Score = 33.5 bits (75), Expect = 1.4
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
+ HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 173 ESHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPC 220
Score = 33.5 bits (75), Expect = 1.4
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
+ HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 317 ESHHVYKPTSPCESHHVYKPTSPCESHHVYQPTSPCESHHVYQPTSPC 364
Score = 33.5 bits (75), Expect = 1.4
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
+ HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 305 ESHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPCESHHVYQPTSPC 352
Score = 33.5 bits (75), Expect = 1.4
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
+ HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 161 ESHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPC 208
Score = 33.1 bits (74), Expect = 1.9
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Frame = +1
Query: 358 HHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 247 HHMYQPTSPCESHHVYQPTSPCESHHVYQPTSPCKSHHVYQPTSPC 292
Score = 33.1 bits (74), Expect = 1.9
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Frame = +1
Query: 358 HHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 115 HHMYQPTSPCESHHVYQPTSPCESHHVYQPTSPCKSHHVYKPTSPC 160
Score = 33.1 bits (74), Expect = 1.9
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
+ HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 341 ESHHVYQPTSPCESHHVYQPTSPCESHHVYKPTSPCESHHVYKPTSPC 388
Score = 33.1 bits (74), Expect = 1.9
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
+ HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 269 ESHHVYQPTSPCKSHHVYQPTSPCESHHVYKPTSPCESHHVYKPTSPC 316
Score = 33.1 bits (74), Expect = 1.9
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +1
Query: 352 QPHHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
+ HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 137 ESHHVYQPTSPCKSHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPC 184
Score = 32.7 bits (73), Expect = 2.4
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Frame = +1
Query: 358 HHHLRSQSP--HHHIHLSSALCHCHHQHVQS*PCI*GHIHPNYPPC 489
HH + SP HH++ ++ C HH + + PC H++ PC
Sbjct: 283 HHVYQPTSPCESHHVYKPTSPCESHHVYKPTSPCESHHVYKPTSPC 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,971,966
Number of Sequences: 1393205
Number of extensions: 8154115
Number of successful extensions: 28437
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 23232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27070
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
