Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016488A_C01 KMC016488A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD42234.1| kinesin-like protein [Arabidopsis thaliana] gi|2... 227 8e-59
emb|CAD42658.1| kinesin-like protein [Arabidopsis thaliana] gi|2... 227 8e-59
ref|NP_189907.1| kinesin -like protein; protein id: At3g43210.1 ... 227 8e-59
dbj|BAC03248.1| kinesin-like protein [Arabidopsis thaliana] 227 8e-59
dbj|BAB86284.1| kinesin-like protein NACK2 [Nicotiana tabacum] 211 6e-54
>emb|CAD42234.1| kinesin-like protein [Arabidopsis thaliana]
gi|23304348|emb|CAD48111.1| putative kinesin protein
[Arabidopsis thaliana]
Length = 937
Score = 227 bits (579), Expect = 8e-59
Identities = 113/144 (78%), Positives = 127/144 (87%), Gaps = 2/144 (1%)
Frame = -1
Query: 608 VEIRRLTWLDQHLAELGNASPALLGDEPAGSVSASIRALKQEREYLSKRVNTKLTAEERE 429
VE+RRLTWL+QHLAELGNASPALLGDEPA V++SIRALKQEREYL+KRVNTKL AEERE
Sbjct: 794 VELRRLTWLEQHLAELGNASPALLGDEPASYVASSIRALKQEREYLAKRVNTKLGAEERE 853
Query: 428 YLYAKWEVPPVGKQRRLQLVNKFWTDPYNLQHVQESAEIVAKLIDFCVSDEN-SKDMFEL 252
LY KW+VPPVGKQRR Q +NK WTDP+N+QHV+ESAEIVAKL+ FC S E K+MFEL
Sbjct: 854 MLYLKWDVPPVGKQRRQQFINKLWTDPHNMQHVRESAEIVAKLVGFCDSGETIRKEMFEL 913
Query: 251 NFASPYNKKTW-GGWNFISNLLNL 183
NFASP +KKTW GWNFISNLL+L
Sbjct: 914 NFASPSDKKTWMMGWNFISNLLHL 937
>emb|CAD42658.1| kinesin-like protein [Arabidopsis thaliana]
gi|23094293|emb|CAD45645.1| putative kinesin-like protein
[Arabidopsis thaliana]
Length = 937
Score = 227 bits (579), Expect = 8e-59
Identities = 113/144 (78%), Positives = 127/144 (87%), Gaps = 2/144 (1%)
Frame = -1
Query: 608 VEIRRLTWLDQHLAELGNASPALLGDEPAGSVSASIRALKQEREYLSKRVNTKLTAEERE 429
VE+RRLTWL+QHLAELGNASPALLGDEPA V++SIRALKQEREYL+KRVNTKL AEERE
Sbjct: 794 VELRRLTWLEQHLAELGNASPALLGDEPASYVASSIRALKQEREYLAKRVNTKLGAEERE 853
Query: 428 YLYAKWEVPPVGKQRRLQLVNKFWTDPYNLQHVQESAEIVAKLIDFCVSDEN-SKDMFEL 252
LY KW+VPPVGKQRR Q +NK WTDP+N+QHV+ESAEIVAKL+ FC S E K+MFEL
Sbjct: 854 MLYLKWDVPPVGKQRRQQFINKLWTDPHNMQHVRESAEIVAKLVGFCDSGETIRKEMFEL 913
Query: 251 NFASPYNKKTW-GGWNFISNLLNL 183
NFASP +KKTW GWNFISNLL+L
Sbjct: 914 NFASPSDKKTWMMGWNFISNLLHL 937
>ref|NP_189907.1| kinesin -like protein; protein id: At3g43210.1 [Arabidopsis thaliana]
gi|11358478|pir||T49235 kinesin-like protein -
Arabidopsis thaliana gi|7649361|emb|CAB89042.1|
kinesin-like protein [Arabidopsis thaliana]
Length = 932
Score = 227 bits (579), Expect = 8e-59
Identities = 113/144 (78%), Positives = 127/144 (87%), Gaps = 2/144 (1%)
Frame = -1
Query: 608 VEIRRLTWLDQHLAELGNASPALLGDEPAGSVSASIRALKQEREYLSKRVNTKLTAEERE 429
VE+RRLTWL+QHLAELGNASPALLGDEPA V++SIRALKQEREYL+KRVNTKL AEERE
Sbjct: 789 VELRRLTWLEQHLAELGNASPALLGDEPASYVASSIRALKQEREYLAKRVNTKLGAEERE 848
Query: 428 YLYAKWEVPPVGKQRRLQLVNKFWTDPYNLQHVQESAEIVAKLIDFCVSDEN-SKDMFEL 252
LY KW+VPPVGKQRR Q +NK WTDP+N+QHV+ESAEIVAKL+ FC S E K+MFEL
Sbjct: 849 MLYLKWDVPPVGKQRRQQFINKLWTDPHNMQHVRESAEIVAKLVGFCDSGETIRKEMFEL 908
Query: 251 NFASPYNKKTW-GGWNFISNLLNL 183
NFASP +KKTW GWNFISNLL+L
Sbjct: 909 NFASPSDKKTWMMGWNFISNLLHL 932
>dbj|BAC03248.1| kinesin-like protein [Arabidopsis thaliana]
Length = 938
Score = 227 bits (579), Expect = 8e-59
Identities = 113/144 (78%), Positives = 127/144 (87%), Gaps = 2/144 (1%)
Frame = -1
Query: 608 VEIRRLTWLDQHLAELGNASPALLGDEPAGSVSASIRALKQEREYLSKRVNTKLTAEERE 429
VE+RRLTWL+QHLAELGNASPALLGDEPA V++SIRALKQEREYL+KRVNTKL AEERE
Sbjct: 795 VELRRLTWLEQHLAELGNASPALLGDEPASYVASSIRALKQEREYLAKRVNTKLGAEERE 854
Query: 428 YLYAKWEVPPVGKQRRLQLVNKFWTDPYNLQHVQESAEIVAKLIDFCVSDEN-SKDMFEL 252
LY KW+VPPVGKQRR Q +NK WTDP+N+QHV+ESAEIVAKL+ FC S E K+MFEL
Sbjct: 855 MLYLKWDVPPVGKQRRQQFINKLWTDPHNMQHVRESAEIVAKLVGFCDSGETIRKEMFEL 914
Query: 251 NFASPYNKKTW-GGWNFISNLLNL 183
NFASP +KKTW GWNFISNLL+L
Sbjct: 915 NFASPSDKKTWMMGWNFISNLLHL 938
>dbj|BAB86284.1| kinesin-like protein NACK2 [Nicotiana tabacum]
Length = 955
Score = 211 bits (537), Expect = 6e-54
Identities = 103/144 (71%), Positives = 126/144 (86%), Gaps = 2/144 (1%)
Frame = -1
Query: 608 VEIRRLTWLDQHLAELGNASPALLGDEPAGSVSASIRALKQEREYLSKRVNTKLTAEERE 429
VE+RRLTWLD+HLA LGNASPALLGD+ AG VS+SI+ALKQEREYL+KRV++KL AEERE
Sbjct: 812 VELRRLTWLDEHLAGLGNASPALLGDDAAGYVSSSIKALKQEREYLAKRVSSKLNAEERE 871
Query: 428 YLYAKWEVPPVGKQ-RRLQLVNKFWTDPYNLQHVQESAEIVAKLIDFCVSDEN-SKDMFE 255
LY KW++PP GKQ RRLQLVNK W+DP N+Q+V++SAE+VAKL+ FC + E+ SK+MF+
Sbjct: 872 MLYVKWDIPPDGKQRRRLQLVNKLWSDPLNMQNVRDSAEVVAKLVGFCETGEHVSKEMFQ 931
Query: 254 LNFASPYNKKTWGGWNFISNLLNL 183
LNF SP +KKTW GWN ISNLL+L
Sbjct: 932 LNFVSPSDKKTWIGWNLISNLLHL 955
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,883,380
Number of Sequences: 1393205
Number of extensions: 10416074
Number of successful extensions: 24251
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 23639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24231
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
