Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016486A_C01 KMC016486A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173737.1| conserved hypothetical protein; protein id: At1... 214 7e-55
pir||F86366 protein F26F24.8 [imported] - Arabidopsis thaliana g... 149 2e-35
gb|AAC00603.1| hypothetical protein [Arabidopsis thaliana] 66 2e-10
gb|AAO52088.1| hypothetical protein [Dictyostelium discoideum] 33 1.8
gb|AAH40526.1| Unknown (protein for MGC:39569) [Homo sapiens] 33 2.3
>ref|NP_173737.1| conserved hypothetical protein; protein id: At1g23230.1
[Arabidopsis thaliana]
Length = 1615
Score = 214 bits (544), Expect = 7e-55
Identities = 108/170 (63%), Positives = 134/170 (78%), Gaps = 1/170 (0%)
Frame = +1
Query: 10 QGQRTASAS-AASRSFQFHPARAPILDLFNLYLGLGRNNRHKPDDLLREPPNKTQKRVHA 186
Q QRT +A+ ++SRS+QFHPARA I+DLFNLYLG R +R KPD+ LR+PPNK+QKRVHA
Sbjct: 3 QSQRTVAATPSSSRSYQFHPARAAIIDLFNLYLG--RGSRQKPDESLRDPPNKSQKRVHA 60
Query: 187 LNRELPPPNEQFILDFEQLQSQFPDQDQFRSVTEAILISLVVQCSGHGPRSDFLLYVLRT 366
NR+LPP NEQF+LDFE LQSQF D +Q R++TE++LISLVVQCS H PR++FLL+ LRT
Sbjct: 61 PNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFALRT 120
Query: 367 LCGIGCINWDSFLPSLLSSVSSAELPVGQMSQAVPTVSSSSLSQSGMLPP 516
LC I INWD+FLPSLLSSVS+AE + Q QA + SS + S + P
Sbjct: 121 LCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVP 170
>pir||F86366 protein F26F24.8 [imported] - Arabidopsis thaliana
gi|9295691|gb|AAF86997.1|AC005292_6 F26F24.8
[Arabidopsis thaliana]
Length = 1583
Score = 149 bits (377), Expect = 2e-35
Identities = 84/170 (49%), Positives = 109/170 (63%), Gaps = 1/170 (0%)
Frame = +1
Query: 10 QGQRTASAS-AASRSFQFHPARAPILDLFNLYLGLGRNNRHKPDDLLREPPNKTQKRVHA 186
Q QRT +A+ ++SRS+QFHPARA I+DLFNLYLG R +R KPD+ LR+PPNK+QKRVHA
Sbjct: 3 QSQRTVAATPSSSRSYQFHPARAAIIDLFNLYLG--RGSRQKPDESLRDPPNKSQKRVHA 60
Query: 187 LNRELPPPNEQFILDFEQLQSQFPDQDQFRSVTEAILISLVVQCSGHGPRSDFLLYVLRT 366
NR+LPP NEQF+LDFE LQSQF + +F ++ ++
Sbjct: 61 PNRDLPPRNEQFLLDFELLQSQFNVKSRFLTI-----------------------FIFLF 97
Query: 367 LCGIGCINWDSFLPSLLSSVSSAELPVGQMSQAVPTVSSSSLSQSGMLPP 516
+ I INWD+FLPSLLSSVS+AE + Q QA + SS + S + P
Sbjct: 98 VISISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVP 147
>gb|AAC00603.1| hypothetical protein [Arabidopsis thaliana]
Length = 1075
Score = 66.2 bits (160), Expect = 2e-10
Identities = 33/51 (64%), Positives = 42/51 (81%), Gaps = 1/51 (1%)
Frame = +1
Query: 10 QGQRTASAS-AASRSFQFHPARAPILDLFNLYLGLGRNNRHKPDDLLREPP 159
Q QRT +A+ ++SRS+QFHPARA I+DLFNLY LGR +R KPD+ LR+PP
Sbjct: 3 QSQRTVAATPSSSRSYQFHPARAAIIDLFNLY--LGRGSRQKPDESLRDPP 51
Score = 46.2 bits (108), Expect = 3e-04
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 376 IGCINWDSFLPSLLSSVSSAELPVGQMSQAVPTVSSSSLSQSGMLPP 516
I INWD+FLPSLLSSVS+AE + Q QA + SS + S + P
Sbjct: 52 ISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVP 98
>gb|AAO52088.1| hypothetical protein [Dictyostelium discoideum]
Length = 377
Score = 33.5 bits (75), Expect = 1.8
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 328 GPRSDFLLYVLRTLCGIGCINWDSFLPSLLSSVSSA 435
G +S+F+L ++ TL I + SF PSLLSS SS+
Sbjct: 3 GSKSNFILLIITTLICISLTHCKSFTPSLLSSSSSS 38
>gb|AAH40526.1| Unknown (protein for MGC:39569) [Homo sapiens]
Length = 1497
Score = 33.1 bits (74), Expect = 2.3
Identities = 25/87 (28%), Positives = 42/87 (47%), Gaps = 8/87 (9%)
Frame = +1
Query: 16 QRTASASAASRSFQFHPARAPILDLFNLYLGLGRNNRHKPDDLLREPPNKTQKR----VH 183
+R + S + P+R L + ++G G + K D PP+ TQ+R V
Sbjct: 1263 ERAKKLDSLLTSSETPPSRLTGLKRLSSFIGAGSPSLVKACD--SSPPHATQRRSLPKVE 1320
Query: 184 ALNR----ELPPPNEQFILDFEQLQSQ 252
A ++ ELPPP+++ + D E L+ Q
Sbjct: 1321 AFSQHHIDELPPPSQELLDDIELLKQQ 1347
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.317 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,188,759
Number of Sequences: 1393205
Number of extensions: 9642303
Number of successful extensions: 28645
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 27506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28626
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
