Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016477A_C01 KMC016477A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA05169.1| agCP7003 [Anopheles gambiae str. PEST] 32 4.7
gb|EAA28587.1| hypothetical protein [Neurospora crassa] 31 8.0
ref|NP_199616.1| putative protein; protein id: At5g48050.1 [Arab... 31 8.0
ref|NP_702003.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.0
>gb|EAA05169.1| agCP7003 [Anopheles gambiae str. PEST]
Length = 1339
Score = 31.6 bits (70), Expect = 4.7
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 60 GSELEPSTPWISGKTRNNNINTQIKRNGK-PIPATFP 167
GS + PW+S KT++++ ++++K GK PAT P
Sbjct: 691 GSGSDDDDPWVSSKTKSSSSSSKVKSKGKSKPPATTP 727
>gb|EAA28587.1| hypothetical protein [Neurospora crassa]
Length = 1360
Score = 30.8 bits (68), Expect = 8.0
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +1
Query: 238 QFMHTSNNTYSSEIIHEDWDLNF 306
QF +T N +S E+I+E W L+F
Sbjct: 1077 QFWYTFQNVFSGEVIYESWTLSF 1099
>ref|NP_199616.1| putative protein; protein id: At5g48050.1 [Arabidopsis thaliana]
gi|10177756|dbj|BAB11069.1|
gb|AAF63108.1~gene_id:MDN11.13~similar to unknown
protein [Arabidopsis thaliana]
Length = 369
Score = 30.8 bits (68), Expect = 8.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 63 SELEPSTPWISGKTRNNNINTQIKRNGKPIPATFPQHDSSI 185
S LEP P++ G R N I+T + +P+ FPQ SS+
Sbjct: 319 SILEPYNPYLHGDARVNYISTSMADQSTFMPSHFPQTYSSM 359
>ref|NP_702003.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497179|gb|AAN36727.1|AE014817_50 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 682
Score = 30.8 bits (68), Expect = 8.0
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 54 GMGSELEPSTPWISGKTRNNNINTQIKRNGKPIPATFPQHDSSI*SGSYINYEELDK 224
G ++ S+ S KT +NI + K N K HD +I YI+Y EL K
Sbjct: 9 GKNFKIRYSSKCKSNKTWKDNIRNRKKENSKKYEKNNLMHDRNIHKHIYIDYLELSK 65
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,569,169
Number of Sequences: 1393205
Number of extensions: 8912732
Number of successful extensions: 20235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20183
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
