Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016470A_C01 KMC016470A_c01
(692 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB64698.1| beta Galactosidase-like protein [Oryza sativa (j... 101 1e-20
pir||T47603 beta Galactosidase-like protein - Arabidopsis thalia... 94 1e-18
ref|NP_680128.1| Expressed protein; protein id: At3g54440.1, sup... 94 1e-18
sp|P81650|BGAL_ALTHA Beta-galactosidase (Lactase) (Beta-D-galact... 52 1e-05
ref|NP_763225.1| Beta-galactosidase/beta-glucuronidase [Vibrio v... 47 2e-04
>dbj|BAB64698.1| beta Galactosidase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 1115
Score = 101 bits (251), Expect = 1e-20
Identities = 42/54 (77%), Positives = 49/54 (89%)
Frame = -3
Query: 690 IHLDHKHMGLGGDDSWSPCVPDQYLIPPVPYSFSVRLCPVMPSTSGHDIYRSQL 529
+HLDHKHMGLGGDDSWSPCV +QYL+PP Y+FSVRLCP++PS+S HDIY SQL
Sbjct: 1060 VHLDHKHMGLGGDDSWSPCVHEQYLLPPARYAFSVRLCPLLPSSSCHDIYHSQL 1113
>pir||T47603 beta Galactosidase-like protein - Arabidopsis thaliana
gi|7258347|emb|CAB77564.1| beta Galactosidase-like
protein [Arabidopsis thaliana]
Length = 1075
Score = 94.4 bits (233), Expect = 1e-18
Identities = 39/54 (72%), Positives = 47/54 (86%)
Frame = -3
Query: 690 IHLDHKHMGLGGDDSWSPCVPDQYLIPPVPYSFSVRLCPVMPSTSGHDIYRSQL 529
+HLDHKHMGLGGDDSW+PCV D++LIPP YSFS+RLCP+ STSG +IY+ QL
Sbjct: 1020 VHLDHKHMGLGGDDSWTPCVHDKFLIPPAQYSFSLRLCPITASTSGLNIYKDQL 1073
>ref|NP_680128.1| Expressed protein; protein id: At3g54440.1, supported by cDNA:
gi_20147223 [Arabidopsis thaliana]
gi|20147224|gb|AAM10327.1| At3g54435 [Arabidopsis
thaliana]
Length = 1107
Score = 94.4 bits (233), Expect = 1e-18
Identities = 39/54 (72%), Positives = 47/54 (86%)
Frame = -3
Query: 690 IHLDHKHMGLGGDDSWSPCVPDQYLIPPVPYSFSVRLCPVMPSTSGHDIYRSQL 529
+HLDHKHMGLGGDDSW+PCV D++LIPP YSFS+RLCP+ STSG +IY+ QL
Sbjct: 1052 VHLDHKHMGLGGDDSWTPCVHDKFLIPPAQYSFSLRLCPITASTSGLNIYKDQL 1105
>sp|P81650|BGAL_ALTHA Beta-galactosidase (Lactase) (Beta-D-galactoside galactohydrolase)
gi|4079639|emb|CAA10470.1| beta-galactosidase
[Pseudoalteromonas haloplanktis]
Length = 1039
Score = 51.6 bits (122), Expect = 1e-05
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = -3
Query: 690 IHLDHKHMGLGGDDSWSPCVPDQYLIPPVPYSFSVRL 580
+H+DH+HMG+GGDDSWSP +YL+ Y++S+ L
Sbjct: 997 VHIDHQHMGVGGDDSWSPSTHKEYLLEQKNYNYSLTL 1033
>ref|NP_763225.1| Beta-galactosidase/beta-glucuronidase [Vibrio vulnificus CMCP6]
gi|27359270|gb|AAO08215.1|AE016812_197
Beta-galactosidase/beta-glucuronidase [Vibrio vulnificus
CMCP6]
Length = 997
Score = 47.4 bits (111), Expect = 2e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -3
Query: 690 IHLDHKHMGLGGDDSWSPCVPDQYLIPPVPYSFSVRLCP 574
+ LDH+HMG+GGDDSWSP V ++ + Y + +R P
Sbjct: 956 LRLDHQHMGVGGDDSWSPSVHKEFQLTEKHYRYQLRFSP 994
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 610,243,861
Number of Sequences: 1393205
Number of extensions: 12773553
Number of successful extensions: 29036
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 28086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29033
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
