Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016468A_C01 KMC016468A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181022.2| unknown protein; protein id: At2g34750.1, suppo... 92 8e-18
pir||T01360 hypothetical protein At2g34750 [imported] - Arabidop... 92 8e-18
pir||B86431 hypothetical protein T5I8.4 [imported] - Arabidopsis... 84 2e-15
ref|NP_174347.1| unknown protein; protein id: At1g30590.1 [Arabi... 84 2e-15
ref|NP_181457.1| unknown protein; protein id: At2g39240.1 [Arabi... 64 2e-09
>ref|NP_181022.2| unknown protein; protein id: At2g34750.1, supported by cDNA:
gi_20465616 [Arabidopsis thaliana]
gi|20465617|gb|AAM20140.1| unknown protein [Arabidopsis
thaliana] gi|23296957|gb|AAN13210.1| unknown protein
[Arabidopsis thaliana]
Length = 613
Score = 91.7 bits (226), Expect = 8e-18
Identities = 51/104 (49%), Positives = 66/104 (63%), Gaps = 5/104 (4%)
Frame = -3
Query: 648 FPLDPCLLKKSESYIXPHFVRWSRVKTTYDSDDDEDGSEMSDDDFVDRNAEELDMMVSVE 469
FP DPCLLK S S+I P+F+ WS VK TYD DDD++ +E+ + D +++E D
Sbjct: 518 FPFDPCLLKSSNSFISPNFIYWSMVKATYDEDDDDNDAEVIVNG--DEDSDEDD------ 569
Query: 468 GLDFDADLNQMSITP-----NNNSLKQHMRMPARIRPSTSPESL 352
D D LN+MSITP N + +RMP+RIRPSTSPESL
Sbjct: 570 EADLDYALNKMSITPKHSFKNKMERDRLLRMPSRIRPSTSPESL 613
>pir||T01360 hypothetical protein At2g34750 [imported] - Arabidopsis thaliana
gi|3132470|gb|AAC16259.1| unknown protein [Arabidopsis
thaliana]
Length = 602
Score = 91.7 bits (226), Expect = 8e-18
Identities = 51/104 (49%), Positives = 66/104 (63%), Gaps = 5/104 (4%)
Frame = -3
Query: 648 FPLDPCLLKKSESYIXPHFVRWSRVKTTYDSDDDEDGSEMSDDDFVDRNAEELDMMVSVE 469
FP DPCLLK S S+I P+F+ WS VK TYD DDD++ +E+ + D +++E D
Sbjct: 507 FPFDPCLLKSSNSFISPNFIYWSMVKATYDEDDDDNDAEVIVNG--DEDSDEDD------ 558
Query: 468 GLDFDADLNQMSITP-----NNNSLKQHMRMPARIRPSTSPESL 352
D D LN+MSITP N + +RMP+RIRPSTSPESL
Sbjct: 559 EADLDYALNKMSITPKHSFKNKMERDRLLRMPSRIRPSTSPESL 602
>pir||B86431 hypothetical protein T5I8.4 [imported] - Arabidopsis thaliana
gi|4587515|gb|AAD25746.1|AC007060_4 EST gb|Z37678 comes
from this gene. [Arabidopsis thaliana]
Length = 622
Score = 84.0 bits (206), Expect = 2e-15
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Frame = -3
Query: 648 FPLDPCLLKKSESYIXPHFVRWSRVKTTYDSDDDEDGSEMSDDDFVDRNAEELDMMVSVE 469
FP DPCLLK S SYI P+F WS VKTTY D DE E+ D+ V+ +A+ + +
Sbjct: 523 FPFDPCLLKMSSSYISPNFNFWSMVKTTYGEDGDE---ELCDEVIVNGDADSAE--EPDD 577
Query: 468 GLDFDADLNQMSITPNNNSLKQH---MRMPARIRPSTSP 361
++ D+++N MS TP ++ +++ ++MP+RIRPSTSP
Sbjct: 578 DVELDSEMNTMSTTPKHSFMRETERLLKMPSRIRPSTSP 616
>ref|NP_174347.1| unknown protein; protein id: At1g30590.1 [Arabidopsis thaliana]
Length = 604
Score = 84.0 bits (206), Expect = 2e-15
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Frame = -3
Query: 648 FPLDPCLLKKSESYIXPHFVRWSRVKTTYDSDDDEDGSEMSDDDFVDRNAEELDMMVSVE 469
FP DPCLLK S SYI P+F WS VKTTY D DE E+ D+ V+ +A+ + +
Sbjct: 505 FPFDPCLLKMSSSYISPNFNFWSMVKTTYGEDGDE---ELCDEVIVNGDADSAE--EPDD 559
Query: 468 GLDFDADLNQMSITPNNNSLKQH---MRMPARIRPSTSP 361
++ D+++N MS TP ++ +++ ++MP+RIRPSTSP
Sbjct: 560 DVELDSEMNTMSTTPKHSFMRETERLLKMPSRIRPSTSP 598
>ref|NP_181457.1| unknown protein; protein id: At2g39240.1 [Arabidopsis thaliana]
gi|7487048|pir||T02578 hypothetical protein At2g39240
[imported] - Arabidopsis thaliana
gi|3402681|gb|AAC28984.1| unknown protein [Arabidopsis
thaliana]
Length = 545
Score = 63.9 bits (154), Expect = 2e-09
Identities = 44/108 (40%), Positives = 61/108 (55%), Gaps = 9/108 (8%)
Frame = -3
Query: 648 FPLDPCLLKKSESYIXPHFVRWSRVKTTYDSDD-----DEDGSEMSDDDFVDRNAEELDM 484
FP P LL+KS S I PHF++ S VK TY+ + D D E SDDD
Sbjct: 456 FPF-PWLLEKSNSLISPHFIKRSEVKKTYEQAEVTVYGDTDNEEDSDDD----------- 503
Query: 483 MVSVEGLDFDADLNQMSITPNNNSL---KQHMRMPARIRPSTSP-ESL 352
+D D ++N+MSITP ++ + ++ ++MP+RI PSTSP ESL
Sbjct: 504 ------VDPDNEMNKMSITPKHSVMHETERLLKMPSRISPSTSPRESL 545
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,169,094
Number of Sequences: 1393205
Number of extensions: 11384699
Number of successful extensions: 55656
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 34948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48404
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
