Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016454A_C01 KMC016454A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199419.1| putative protein; protein id: At5g46070.1 [Arab... 64 1e-09
ref|NP_171879.1| hypothetical protein; protein id: At1g03830.1 [... 50 2e-05
dbj|BAC42884.1| unknown protein [Arabidopsis thaliana] 50 2e-05
ref|NP_248662.1| DNA topoisomerase I (topA) {Bacillus subtilis [... 35 0.87
pir||S54460 hypothetical protein YMR085w - yeast (Saccharomyces ... 33 3.3
>ref|NP_199419.1| putative protein; protein id: At5g46070.1 [Arabidopsis thaliana]
gi|9757727|dbj|BAB08252.1| contains similarity to
guanylate binding protein~gene_id:MCL19.12 [Arabidopsis
thaliana]
Length = 1060
Score = 64.3 bits (155), Expect = 1e-09
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = -3
Query: 571 RGTKRARSTSSPLRHSQPEDGGSIFEGANDDHSQRTNEEDYKKFTVQKLKQELTKHNYGD 392
R KRARST H ++G F+ ++ D+ + EEDY+K TVQ LK ELTK++ G
Sbjct: 961 RTNKRARSTRGD-DHGPTDEGDEDFQ-SHQDNGEEEEEEDYRKLTVQNLKHELTKYDCGH 1018
Query: 391 QLLRLKNPTQKDIIALYEKCVLQK 320
LL + +K+I+ALYE VL K
Sbjct: 1019 LLLNRGHQNKKEILALYEAHVLPK 1042
>ref|NP_171879.1| hypothetical protein; protein id: At1g03830.1 [Arabidopsis thaliana]
gi|25406745|pir||H86168 hypothetical protein [imported] -
Arabidopsis thaliana gi|4204314|gb|AAD10695.1|
Hypothetical protein [Arabidopsis thaliana]
Length = 991
Score = 50.4 bits (119), Expect = 2e-05
Identities = 19/44 (43%), Positives = 35/44 (79%)
Frame = -3
Query: 451 YKKFTVQKLKQELTKHNYGDQLLRLKNPTQKDIIALYEKCVLQK 320
+ K+T++KL+ E+ +H +G +L+ LKNP ++D++ LYE+ VL+K
Sbjct: 948 HSKYTMKKLRTEILEHGFGAELVGLKNPRKRDLVQLYERTVLRK 991
>dbj|BAC42884.1| unknown protein [Arabidopsis thaliana]
Length = 65
Score = 50.4 bits (119), Expect = 2e-05
Identities = 19/44 (43%), Positives = 35/44 (79%)
Frame = -3
Query: 451 YKKFTVQKLKQELTKHNYGDQLLRLKNPTQKDIIALYEKCVLQK 320
+ K+T++KL+ E+ +H +G +L+ LKNP ++D++ LYE+ VL+K
Sbjct: 22 HSKYTMKKLRTEILEHGFGAELVGLKNPRKRDLVQLYERTVLRK 65
>ref|NP_248662.1| DNA topoisomerase I (topA) {Bacillus subtilis [Methanococcus
jannaschii] gi|14423964|sp|Q59046|TOP1_METJA DNA
topoisomerase I (Omega-protein) (Relaxing enzyme)
(Untwisting enzyme) (Swivelase) gi|2127861|pir||B64506
DNA topoisomerase (EC 5.99.1.2) - Methanococcus
jannaschii gi|1592234|gb|AAB99673.1| DNA topoisomerase I
(topA) {Bacillus subtilis [Methanococcus jannaschii]
Length = 761
Score = 34.7 bits (78), Expect = 0.87
Identities = 14/44 (31%), Positives = 23/44 (51%)
Frame = +2
Query: 5 KRNSLSYFKSEPKQRSRTQEKLYRNIKYTHPTQLKQSINNDKAF 136
+R + SYFK PK+ +KLY N ++P Q + D+ +
Sbjct: 286 QREAYSYFKISPKETQEIAQKLYENALISYPRTSSQKLPKDRKY 329
>pir||S54460 hypothetical protein YMR085w - yeast (Saccharomyces cerevisiae)
Length = 471
Score = 32.7 bits (73), Expect = 3.3
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = -3
Query: 541 SPLRHSQPEDGGSIFEGANDDHSQRTNEEDYKKFTVQKLKQELTKHNYGDQLLRLKNPTQ 362
S + + + D I++G H + ED+ TVQKL+ EL+K G N Q
Sbjct: 56 SKVVYLEDNDIAHIYDGELHIHCSKIGSEDFSFRTVQKLELELSKIKKGP----YDNFMQ 111
Query: 361 KDIIALYEKCVLQKS 317
K+I YE+C K+
Sbjct: 112 KEI---YEQCETTKN 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,481,377
Number of Sequences: 1393205
Number of extensions: 8780862
Number of successful extensions: 23803
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23779
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
