Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016413A_C01 KMC016413A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181933.1| 6,7-dimethyl-8-ribityllumazine synthase precurs... 227 1e-58
gb|AAD44809.1|AF148648_1 6,7-dimethyl-8-ribityllumazine synthase... 223 1e-57
pdb|1C2Y|A Chain A, Crystal Structures Of A Pentameric Fungal An... 222 2e-57
sp|Q9XH32|RISB_SPIOL 6,7-dimethyl-8-ribityllumazine synthase, ch... 222 2e-57
emb|CAD41245.1| OSJNBa0067K08.9 [Oryza sativa (japonica cultivar... 207 8e-53
>ref|NP_181933.1| 6,7-dimethyl-8-ribityllumazine synthase precursor; protein id:
At2g44050.1, supported by cDNA: gi_15292958, supported
by cDNA: gi_20259132, supported by cDNA: gi_5532609
[Arabidopsis thaliana] gi|20139375|sp|O80575|RISB_ARATH
6,7-dimethyl-8-ribityllumazine synthase, chloroplast
precursor (DMRL synthase) (Lumazine synthase)
gi|7488301|pir||T00685 riboflavin synthase homolog
At2g44050 - Arabidopsis thaliana
gi|3212862|gb|AAC23413.1| 6,7-dimethyl-8-ribityllumazine
synthase precursor [Arabidopsis thaliana]
gi|5532610|gb|AAD44810.1|AF148649_1
6,7-dimethyl-8-ribityllumazine synthase precursor
[Arabidopsis thaliana] gi|15292959|gb|AAK93590.1|
putative 6,7-dimethyl-8-ribityllumazine synthase
precursor [Arabidopsis thaliana]
gi|20259133|gb|AAM14282.1| putative
6,7-dimethyl-8-ribityllumazine synthase precursor
[Arabidopsis thaliana]
Length = 227
Score = 227 bits (578), Expect = 1e-58
Identities = 107/134 (79%), Positives = 124/134 (91%)
Frame = -3
Query: 590 FNEIVTXPLLEGALGAFKNYSVQDEDIDVVWVPGCFEIGAVATSLGKSGKYNAIVCIGAV 411
FNE+VT LLEGA+ FK YSV++EDI+V+WVPG FEIG VA +LGKSGK++A++CIGAV
Sbjct: 94 FNEVVTKLLLEGAIETFKKYSVREEDIEVIWVPGSFEIGVVAQNLGKSGKFHAVLCIGAV 153
Query: 410 VRGDTTHYDAVANSAASGVLSAGLNSGVPCIFGVLTCENMDQALNRAGGKSGNKGAEAAL 231
+RGDTTHYDAVANSAASGVLSA +NSGVPCIFGVLTCE+MDQALNR+GGK+GNKGAE AL
Sbjct: 154 IRGDTTHYDAVANSAASGVLSASINSGVPCIFGVLTCEDMDQALNRSGGKAGNKGAETAL 213
Query: 230 TAIEMASLFEHHLK 189
TA+EMASLFEHHLK
Sbjct: 214 TALEMASLFEHHLK 227
>gb|AAD44809.1|AF148648_1 6,7-dimethyl-8-ribityllumazine synthase precursor [Nicotiana
tabacum]
Length = 225
Score = 223 bits (569), Expect = 1e-57
Identities = 105/134 (78%), Positives = 118/134 (87%)
Frame = -3
Query: 590 FNEIVTXPLLEGALGAFKNYSVQDEDIDVVWVPGCFEIGAVATSLGKSGKYNAIVCIGAV 411
FN+++T LLEGAL FKNYSV++EDIDVVWVPGCFEIG VA LGKS KY AI+CIGAV
Sbjct: 91 FNDLITKKLLEGALDTFKNYSVREEDIDVVWVPGCFEIGVVAQQLGKSQKYQAILCIGAV 150
Query: 410 VRGDTTHYDAVANSAASGVLSAGLNSGVPCIFGVLTCENMDQALNRAGGKSGNKGAEAAL 231
+RGDT+HYDAV N+A SGVLSAGLNSG PCIFGVLTC+ ++QA NR GGK+GNKGAE AL
Sbjct: 151 IRGDTSHYDAVVNAATSGVLSAGLNSGTPCIFGVLTCDTLEQAFNRVGGKAGNKGAETAL 210
Query: 230 TAIEMASLFEHHLK 189
TAIEMASLFEHHLK
Sbjct: 211 TAIEMASLFEHHLK 224
>pdb|1C2Y|A Chain A, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
gi|9954975|pdb|1C2Y|B Chain B, Crystal Structures Of A
Pentameric Fungal And An Icosahedral Plant Lumazine
Synthase Reveals The Structural Basis For Differences In
Assembly gi|9954976|pdb|1C2Y|C Chain C, Crystal
Structures Of A Pentameric Fungal And An Icosahedral
Plant Lumazine Synthase Reveals The Structural Basis For
Differences In Assembly gi|9954977|pdb|1C2Y|D Chain D,
Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
gi|9954978|pdb|1C2Y|E Chain E, Crystal Structures Of A
Pentameric Fungal And An Icosahedral Plant Lumazine
Synthase Reveals The Structural Basis For Differences In
Assembly gi|9954979|pdb|1C2Y|F Chain F, Crystal
Structures Of A Pentameric Fungal And An Icosahedral
Plant Lumazine Synthase Reveals The Structural Basis For
Differences In Assembly gi|9954980|pdb|1C2Y|G Chain G,
Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
gi|9954981|pdb|1C2Y|H Chain H, Crystal Structures Of A
Pentameric Fungal And An Icosahedral Plant Lumazine
Synthase Reveals The Structural Basis For Differences In
Assembly gi|9954982|pdb|1C2Y|I Chain I, Crystal
Structures Of A Pentameric Fungal And An Icosahedral
Plant Lumazine Synthase Reveals The Structural Basis For
Differences In Assembly gi|9954983|pdb|1C2Y|J Chain J,
Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
gi|9954984|pdb|1C2Y|K Chain K, Crystal Structures Of A
Pentameric Fungal And An Icosahedral Plant Lumazine
Synthase Reveals The Structural Basis For Differences In
Assembly gi|9954985|pdb|1C2Y|L Chain L, Crystal
Structures Of A Pentameric Fungal And An Icosahedral
Plant Lumazine Synthase Reveals The Structural Basis For
Differences In Assembly gi|9954986|pdb|1C2Y|M Chain M,
Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
gi|9954987|pdb|1C2Y|N Chain N, Crystal Structures Of A
Pentameric Fungal And An Icosahedral Plant Lumazine
Synthase Reveals The Structural Basis For Differences In
Assembly gi|9954988|pdb|1C2Y|O Chain O, Crystal
Structures Of A Pentameric Fungal And An Icosahedral
Plant Lumazine Synthase Reveals The Structural Basis For
Differences In Assembly gi|9954989|pdb|1C2Y|P Chain P,
Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
gi|9954990|pdb|1C2Y|Q Chain Q, Crystal Structures Of A
Pentameric Fungal And An Icosahedral Plant Lumazine
Synthase Reveals The Structural Basis For Differences In
Assembly gi|9954991|pdb|1C2Y|R Chain R, Crystal
Structures Of A Pentameric Fungal And An Icosahedral
Plant Lumazine Synthase Reveals The Structural Basis For
Differences In Assembly gi|9954992|pdb|1C2Y|S Chain S,
Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
gi|9954993|pdb|1C2Y|T Chain T, Crystal Structures Of A
Pentameric Fungal And An Icosahedral Plant Lumazine
Synthase Reveals The Structural Basis For Differences In
Assembly
Length = 156
Score = 222 bits (566), Expect = 2e-57
Identities = 107/134 (79%), Positives = 122/134 (90%)
Frame = -3
Query: 590 FNEIVTXPLLEGALGAFKNYSVQDEDIDVVWVPGCFEIGAVATSLGKSGKYNAIVCIGAV 411
FNE VT L+EGAL FK YSV +EDIDVVWVPG +E+G A +LGKSGKY+AIVC+GAV
Sbjct: 23 FNEFVTRRLMEGALDTFKKYSV-NEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAV 81
Query: 410 VRGDTTHYDAVANSAASGVLSAGLNSGVPCIFGVLTCENMDQALNRAGGKSGNKGAEAAL 231
V+GDT+HYDAV NSA+SGVLSAGLNSGVPC+FGVLTC+NMDQA+NRAGGK+GNKGAE+AL
Sbjct: 82 VKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKGAESAL 141
Query: 230 TAIEMASLFEHHLK 189
TAIEMASLFEHHLK
Sbjct: 142 TAIEMASLFEHHLK 155
>sp|Q9XH32|RISB_SPIOL 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor
(DMRL synthase) (Lumazine synthase)
gi|5532606|gb|AAD44808.1|AF147203_1
6,7-dimethyl-8-ribityllumazine synthase precursor
[Spinacia oleracea]
Length = 222
Score = 222 bits (566), Expect = 2e-57
Identities = 107/134 (79%), Positives = 122/134 (90%)
Frame = -3
Query: 590 FNEIVTXPLLEGALGAFKNYSVQDEDIDVVWVPGCFEIGAVATSLGKSGKYNAIVCIGAV 411
FNE VT L+EGAL FK YSV +EDIDVVWVPG +E+G A +LGKSGKY+AIVC+GAV
Sbjct: 89 FNEFVTRRLMEGALDTFKKYSV-NEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAV 147
Query: 410 VRGDTTHYDAVANSAASGVLSAGLNSGVPCIFGVLTCENMDQALNRAGGKSGNKGAEAAL 231
V+GDT+HYDAV NSA+SGVLSAGLNSGVPC+FGVLTC+NMDQA+NRAGGK+GNKGAE+AL
Sbjct: 148 VKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKGAESAL 207
Query: 230 TAIEMASLFEHHLK 189
TAIEMASLFEHHLK
Sbjct: 208 TAIEMASLFEHHLK 221
>emb|CAD41245.1| OSJNBa0067K08.9 [Oryza sativa (japonica cultivar-group)]
Length = 221
Score = 207 bits (527), Expect = 8e-53
Identities = 103/133 (77%), Positives = 118/133 (88%)
Frame = -3
Query: 590 FNEIVTXPLLEGALGAFKNYSVQDEDIDVVWVPGCFEIGAVATSLGKSGKYNAIVCIGAV 411
FNEIVT LL+GAL F+ YSV+ E+I VV VPG FEI A LGKSGK++AI+CIGAV
Sbjct: 88 FNEIVTNLLLQGALETFERYSVKKENITVVSVPGSFEIPVAAQKLGKSGKFDAILCIGAV 147
Query: 410 VRGDTTHYDAVANSAASGVLSAGLNSGVPCIFGVLTCENMDQALNRAGGKSGNKGAEAAL 231
+RGDTTHYDAVANSAASGVLSAGL++ +PCIFGVLTC++MDQALNRAGGK+GNKGAEAAL
Sbjct: 148 IRGDTTHYDAVANSAASGVLSAGLSAEIPCIFGVLTCDDMDQALNRAGGKAGNKGAEAAL 207
Query: 230 TAIEMASLFEHHL 192
TAIEMASLF+HHL
Sbjct: 208 TAIEMASLFQHHL 220
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,785,301
Number of Sequences: 1393205
Number of extensions: 11119499
Number of successful extensions: 27328
Number of sequences better than 10.0: 240
Number of HSP's better than 10.0 without gapping: 26219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27232
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
