Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016342A_C01 KMC016342A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564240.1| expressed protein; protein id: At1g26160.1, sup... 84 6e-16
pir||G86387 hypothetical protein F28B23.16 - Arabidopsis thalian... 84 6e-16
dbj|BAB92794.1| P0039G05.13 [Oryza sativa (japonica cultivar-gro... 81 5e-15
ref|NP_179962.1| unknown protein; protein id: At2g23820.1 [Arabi... 45 5e-04
gb|EAA17596.1| hypothetical protein [Plasmodium yoelii yoelii] 33 1.6
>ref|NP_564240.1| expressed protein; protein id: At1g26160.1, supported by cDNA:
37861., supported by cDNA: gi_15810416, supported by
cDNA: gi_21280856 [Arabidopsis thaliana]
gi|15810417|gb|AAL07096.1| unknown protein [Arabidopsis
thaliana] gi|21280857|gb|AAM45013.1| unknown protein
[Arabidopsis thaliana] gi|21593302|gb|AAM65251.1|
unknown [Arabidopsis thaliana]
Length = 258
Score = 84.3 bits (207), Expect = 6e-16
Identities = 41/51 (80%), Positives = 45/51 (87%)
Frame = -3
Query: 480 EMILPALEYEMEHGKVLDEFFLSTAGKFQTEIGKSWASEIISRRKSLSANQ 328
EMIL ALEYE EHGKVLDEFF+STAGKFQTEIGKSWA+EI +RRKS N+
Sbjct: 206 EMILQALEYEAEHGKVLDEFFISTAGKFQTEIGKSWAAEINARRKSQLTNR 256
>pir||G86387 hypothetical protein F28B23.16 - Arabidopsis thaliana
gi|12321182|gb|AAG50684.1|AC079829_17 hypothetical
protein [Arabidopsis thaliana]
Length = 248
Score = 84.3 bits (207), Expect = 6e-16
Identities = 41/51 (80%), Positives = 45/51 (87%)
Frame = -3
Query: 480 EMILPALEYEMEHGKVLDEFFLSTAGKFQTEIGKSWASEIISRRKSLSANQ 328
EMIL ALEYE EHGKVLDEFF+STAGKFQTEIGKSWA+EI +RRKS N+
Sbjct: 196 EMILQALEYEAEHGKVLDEFFISTAGKFQTEIGKSWAAEINARRKSQLTNR 246
>dbj|BAB92794.1| P0039G05.13 [Oryza sativa (japonica cultivar-group)]
Length = 461
Score = 81.3 bits (199), Expect = 5e-15
Identities = 39/51 (76%), Positives = 43/51 (83%)
Frame = -3
Query: 480 EMILPALEYEMEHGKVLDEFFLSTAGKFQTEIGKSWASEIISRRKSLSANQ 328
EMIL ALEYE EHGKVLDEFFLSTAGKFQTEIGKSWA+E+ +RR+ Q
Sbjct: 410 EMILQALEYEKEHGKVLDEFFLSTAGKFQTEIGKSWAAEVNARREQRCGKQ 460
>ref|NP_179962.1| unknown protein; protein id: At2g23820.1 [Arabidopsis thaliana]
gi|25412160|pir||D84629 hypothetical protein At2g23820
[imported] - Arabidopsis thaliana
gi|3738315|gb|AAC63656.1| unknown protein [Arabidopsis
thaliana]
Length = 243
Score = 44.7 bits (104), Expect = 5e-04
Identities = 24/45 (53%), Positives = 28/45 (61%)
Frame = -3
Query: 480 EMILPALEYEMEHGKVLDEFFLSTAGKFQTEIGKSWASEIISRRK 346
E+IL ALEYE GKFQT IGK+WASEI+SRR+
Sbjct: 210 ELILQALEYEQ--------------GKFQTNIGKAWASEIVSRRR 240
>gb|EAA17596.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 504
Score = 33.1 bits (74), Expect = 1.6
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 119 QKKNKKEKLSFKASPTKTKIESKDEKRKFPMKGTTNIYHPKL 244
+KK+KKEKL K + ++ KD+K K +K T I+ P+L
Sbjct: 400 KKKDKKEKLLKKKDKKEKLLKKKDKKVKKSLKKTLLIHEPRL 441
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,155,937
Number of Sequences: 1393205
Number of extensions: 7607653
Number of successful extensions: 18272
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18254
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
