Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016334A_C01 KMC016334A_c01
(782 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176940.1| F12A21.13; protein id: At1g67740.1, supported b... 174 1e-42
gb|AAM65279.1| unknown [Arabidopsis thaliana] 174 1e-42
sp|P80470|PSBY_SPIOL Photosystem II core complex proteins psbY, ... 173 3e-42
emb|CAD37056.1| hypothetical protein [Neurospora crassa] gi|2892... 34 0.002
ref|NP_594446.1| hypothetical protein; extensin-like; with SH3 S... 42 0.013
>ref|NP_176940.1| F12A21.13; protein id: At1g67740.1, supported by cDNA: 3813.,
supported by cDNA: gi_15215724, supported by cDNA:
gi_15529289, supported by cDNA: gi_20453250, supported
by cDNA: gi_3414927 [Arabidopsis thaliana]
gi|6093827|sp|O49347|PSBY_ARATH Photosystem II core
complex proteins psbY, chloroplast precursor (L-arginine
metabolising enzyme) (L-AME) [Contains: Photosystem II
protein psbY-1 (psbY-A1); Photosystem II protein psbY-2
(psbY-A2)] gi|11285513|pir||T51847 manganese-binding
protein PsbY precursor, photosystem II-associated
[imported] - Arabidopsis thaliana
gi|2956690|emb|CAA11248.1| PSBY [Arabidopsis thaliana]
gi|3414928|gb|AAC95011.1| PsbY precursor [Arabidopsis
thaliana] gi|11072011|gb|AAG28890.1|AC008113_6 F12A21.13
[Arabidopsis thaliana] gi|15215725|gb|AAK91408.1|
At1g67740/F12A21_13 [Arabidopsis thaliana]
gi|15529290|gb|AAK97739.1| At1g67740/F12A21_13
[Arabidopsis thaliana] gi|20453251|gb|AAM19864.1|
At1g67740/F12A21_13 [Arabidopsis thaliana]
gi|24417352|gb|AAN60286.1| unknown [Arabidopsis
thaliana]
Length = 189
Score = 174 bits (441), Expect = 1e-42
Identities = 97/158 (61%), Positives = 119/158 (74%), Gaps = 4/158 (2%)
Frame = -2
Query: 763 NTSISTTSMAGTAIAGAIFSSLVSCDAAFAAQQIAEIA----EGDNRGLALLLPLIPAIA 596
N S++ TS TA+AGA+FSSL + A A QQIA++A DNRGLALLLP++PAIA
Sbjct: 40 NVSLAVTS---TALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIA 96
Query: 595 WVLFNILQPALNQINRMRNTKGVIVGLGLGLGGLAAGSGMLWAPEASAGELGMIADAAAA 416
WVL+NILQPA+NQ+N+MR +KG++VGLG+G GGLAA + PEA A A AAA
Sbjct: 97 WVLYNILQPAINQVNKMRESKGIVVGLGIG-GGLAASGLLTPPPEAYA------AAEAAA 149
Query: 415 GGSDNRGQLLLFVVAPAIGWVLFNILQPALNQINRMRS 302
SD+RGQLLL VV PA+ WVL+NILQPALNQIN+MRS
Sbjct: 150 ASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187
>gb|AAM65279.1| unknown [Arabidopsis thaliana]
Length = 185
Score = 174 bits (441), Expect = 1e-42
Identities = 97/158 (61%), Positives = 119/158 (74%), Gaps = 4/158 (2%)
Frame = -2
Query: 763 NTSISTTSMAGTAIAGAIFSSLVSCDAAFAAQQIAEIA----EGDNRGLALLLPLIPAIA 596
N S++ TS TA+AGA+FSSL + A A QQIA++A DNRGLALLLP++PAIA
Sbjct: 36 NVSLAVTS---TALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIA 92
Query: 595 WVLFNILQPALNQINRMRNTKGVIVGLGLGLGGLAAGSGMLWAPEASAGELGMIADAAAA 416
WVL+NILQPA+NQ+N+MR +KG++VGLG+G GGLAA + PEA A A AAA
Sbjct: 93 WVLYNILQPAINQVNKMRESKGIVVGLGIG-GGLAASGLLTPPPEAYA------AAEAAA 145
Query: 415 GGSDNRGQLLLFVVAPAIGWVLFNILQPALNQINRMRS 302
SD+RGQLLL VV PA+ WVL+NILQPALNQIN+MRS
Sbjct: 146 ASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 183
>sp|P80470|PSBY_SPIOL Photosystem II core complex proteins psbY, chloroplast precursor
(L-arginine metabolising enzyme) (L-AME) [Contains:
Photosystem II protein psbY-1 (psbY-A1); Photosystem II
protein psbY-2 (psbY-A2)] gi|7484673|pir||T08902
manganese-binding protein PsbY precursor, photosystem
II-associated - spinach gi|3337435|gb|AAC95000.1| PsbY
precursor; putative photosytem II peptide [Spinacia
oleracea]
Length = 199
Score = 173 bits (438), Expect = 3e-42
Identities = 98/165 (59%), Positives = 117/165 (70%), Gaps = 4/165 (2%)
Frame = -2
Query: 781 GLSSAENTSISTTSMAGTAIAGAIFSSLVSCDAAFAAQQIAEIAE----GDNRGLALLLP 614
GLS+++ + + AIAGA+F++L S D AFA QQ+A+IA DNRGLALLLP
Sbjct: 42 GLSNSKLPMGLSPIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLP 101
Query: 613 LIPAIAWVLFNILQPALNQINRMRNTKGVIVGLGLGLGGLAAGSGMLWAPEASAGELGMI 434
+IPA+ WVLFNILQPALNQIN+MRN K + +GLGL GLA +L PEA A
Sbjct: 102 IIPALGWVLFNILQPALNQINKMRNEKKAFI-VGLGLSGLATSGLLLATPEAQA------ 154
Query: 433 ADAAAAGGSDNRGQLLLFVVAPAIGWVLFNILQPALNQINRMRSE 299
A A GSDNRG LLL VV PAIGWVLFNILQPALNQ+N+MRS+
Sbjct: 155 ASEEIARGSDNRGTLLLLVVLPAIGWVLFNILQPALNQLNKMRSQ 199
>emb|CAD37056.1| hypothetical protein [Neurospora crassa] gi|28920247|gb|EAA29623.1|
predicted protein [Neurospora crassa]
Length = 624
Score = 33.9 bits (76), Expect(2) = 0.002
Identities = 30/131 (22%), Positives = 54/131 (40%), Gaps = 6/131 (4%)
Frame = +3
Query: 363 IAGATTNSRSCPLLSLPPAAAASAIIP------NSPADASGAHNIPEPAANPPSPSPSPT 524
+A ATT S + ++ PP + + +IP N+PA A+ + + +++ S S S
Sbjct: 98 VAAATTISETPVIIVFPPPSPVTTLIPFVASFGNAPAPAASSTSSDSSSSSSSSSSSSTP 157
Query: 525 MTPLVLRILLIWFSAGCRMLNSTQAIAGINGSSRARPRLSPSAISAIC*AAKAASQLTSD 704
+ P S+ L ST A NG++ + S+ + + + T+
Sbjct: 158 LVPTSSS-----SSSAAATLTSTTASTIGNGTNPITSASTTSSAAPVASVTSTTTSTTTS 212
Query: 705 EKMAPAMAVPA 737
A A A A
Sbjct: 213 TTTADAAATTA 223
Score = 29.6 bits (65), Expect(2) = 0.002
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +2
Query: 710 NGPGNGGAGHGSGGDAGVFSGG 775
NG GN G G+G+GG G +GG
Sbjct: 235 NGNGNNGNGNGNGGGNGAGNGG 256
>ref|NP_594446.1| hypothetical protein; extensin-like; with SH3 Src homology domain
[Schizosaccharomyces pombe] gi|7490967|pir||T38236
hypothetical protein SPAC23A1.17 - fission yeast
(Schizosaccharomyces pombe) gi|2879805|emb|CAA16991.1|
hypothetical protein; extensin-like; with SH3 Src
homology domain [Schizosaccharomyces pombe]
Length = 1611
Score = 41.6 bits (96), Expect = 0.013
Identities = 35/126 (27%), Positives = 53/126 (41%)
Frame = +3
Query: 360 PIAGATTNSRSCPLLSLPPAAAASAIIPNSPADASGAHNIPEPAANPPSPSPSPTMTPLV 539
P++ + S + PL +PP S+ P P ++ A IP P+ P P P PT TP V
Sbjct: 995 PLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP--PVPIPTSTPPV 1052
Query: 540 LRILLIWFSAGCRMLNSTQAIAGINGSSRARPRLSPSAISAIC*AAKAASQLTSDEKMAP 719
+ SA + + I I S A P +PS I + + AA + P
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112
Query: 720 AMAVPA 737
+ P+
Sbjct: 1113 PVPAPS 1118
Score = 39.3 bits (90), Expect = 0.065
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 396 PLLSLPPAAAASAIIPNSPADASGAHNIPEPAANPPSPSPSPTMTPL 536
P ++ PP A S+ IP P A+G +P P+ PP P PS + P+
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210
Score = 34.7 bits (78), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 396 PLLSLPPAAAASAIIPNSPADASGAHNIPEPAANPPSP----SPSPTMTPL 536
P LPP +A P PA +S A ++ P ++ PSP SPSPT + +
Sbjct: 1222 PSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSM 1272
Score = 33.9 bits (76), Expect = 2.7
Identities = 18/43 (41%), Positives = 22/43 (50%)
Frame = +3
Query: 411 PPAAAASAIIPNSPADASGAHNIPEPAANPPSPSPSPTMTPLV 539
PP S P PA +SG +P+PAA P P P P+ P V
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP-PVPPPSEAPPV 1200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 731,705,106
Number of Sequences: 1393205
Number of extensions: 19158230
Number of successful extensions: 202310
Number of sequences better than 10.0: 455
Number of HSP's better than 10.0 without gapping: 94086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174919
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
