Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016254A_C01 KMC016254A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein ... 213 1e-54
gb|AAK92792.1| putative CCR4-associated factor [Arabidopsis thal... 213 1e-54
ref|NP_565735.1| putative CCR4-associated factor; protein id: At... 207 8e-53
ref|NP_178193.1| CCR4-associated factor, putative\0CCR4-associat... 206 2e-52
ref|NP_173044.1| BTG1 binding factor 1, putative; protein id: At... 183 2e-45
>ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein id: At5g10960.1,
supported by cDNA: gi_15292842 [Arabidopsis thaliana]
gi|11288398|pir||T50805 CCR4-ASSOCIATED FACTOR-like
protein - Arabidopsis thaliana
gi|8979730|emb|CAB96851.1| CCR4-ASSOCIATED FACTOR-like
protein [Arabidopsis thaliana]
gi|23296319|gb|AAN13040.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 277
Score = 213 bits (543), Expect = 1e-54
Identities = 103/133 (77%), Positives = 116/133 (86%)
Frame = +1
Query: 184 KGDSVQIREVWNDNLEEEFALIREIVDDFSYVAMDTEFPGVVLRPLGNFKNINDYNYQTL 363
K DS+ IREVW+ NL EEFALIREIVD FSY+AMDTEFPGVVL+P+ FK ND NY+TL
Sbjct: 6 KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65
Query: 364 KDNVDMLKLIQLGLTFSDENGNLPTCGTETPCIWQFNFREFNVSEDIFASDSIELLRQSG 543
K+NVD+LKLIQ+GLTFSDENGNLPTCGT+ CIWQFNFREFN+ EDI+AS+SIELLRQ G
Sbjct: 66 KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125
Query: 544 IDLKKINEKGIDV 582
ID KK EKGIDV
Sbjct: 126 IDFKKNIEKGIDV 138
>gb|AAK92792.1| putative CCR4-associated factor [Arabidopsis thaliana]
Length = 277
Score = 213 bits (543), Expect = 1e-54
Identities = 103/133 (77%), Positives = 116/133 (86%)
Frame = +1
Query: 184 KGDSVQIREVWNDNLEEEFALIREIVDDFSYVAMDTEFPGVVLRPLGNFKNINDYNYQTL 363
K DS+ IREVW+ NL EEFALIREIVD FSY+AMDTEFPGVVL+P+ FK ND NY+TL
Sbjct: 6 KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65
Query: 364 KDNVDMLKLIQLGLTFSDENGNLPTCGTETPCIWQFNFREFNVSEDIFASDSIELLRQSG 543
K+NVD+LKLIQ+GLTFSDENGNLPTCGT+ CIWQFNFREFN+ EDI+AS+SIELLRQ G
Sbjct: 66 KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125
Query: 544 IDLKKINEKGIDV 582
ID KK EKGIDV
Sbjct: 126 IDFKKNIEKGIDV 138
>ref|NP_565735.1| putative CCR4-associated factor; protein id: At2g32070.1, supported
by cDNA: gi_15293024 [Arabidopsis thaliana]
gi|15293025|gb|AAK93623.1| putative CCR4-associated
factor [Arabidopsis thaliana] gi|20197620|gb|AAD15397.2|
putative CCR4-associated factor [Arabidopsis thaliana]
gi|23296713|gb|AAN13153.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 275
Score = 207 bits (527), Expect = 8e-53
Identities = 99/138 (71%), Positives = 116/138 (83%), Gaps = 1/138 (0%)
Frame = +1
Query: 169 MSILQKGDSVQIREVWNDNLEEEFALIREIVDDFSYVAMDTEFPGVVLRPLGNFKNINDY 348
MS+ K DS+QIREVWNDNLE E ALIRE+VDDF +VAMDTEFPG+V RP+G FK +Y
Sbjct: 1 MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60
Query: 349 NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTETP-CIWQFNFREFNVSEDIFASDSIE 525
+Y+TLK NV++LK+IQLGLTFSDE GNLPTCGT+ CIWQFNFREF++ DI+A+DSIE
Sbjct: 61 HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120
Query: 526 LLRQSGIDLKKINEKGID 579
LLRQSGID K NE GID
Sbjct: 121 LLRQSGIDFVKNNEFGID 138
>ref|NP_178193.1| CCR4-associated factor, putative\0CCR4-associated factor, putative;
protein id: At1g80780.1, supported by cDNA: gi_17979380,
supported by cDNA: gi_20465784 [Arabidopsis thaliana]
gi|25363292|pir||D96840 hypothetical protein F23A5.13
[imported] - Arabidopsis thaliana
gi|6503290|gb|AAF14666.1|AC011713_14 Similar to
gb|U21855 CCR4-associated factor 1 (CAF1) from Mus
musculus. ESTs gb|AAA394972, gb|AA585812 and gb|H77015
come from this gene. [Arabidopsis thaliana]
gi|17979381|gb|AAL49916.1| putative CCR4-associated
factorCCR4-associated factor [Arabidopsis thaliana]
gi|20465785|gb|AAM20381.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 274
Score = 206 bits (523), Expect = 2e-52
Identities = 97/137 (70%), Positives = 116/137 (83%)
Frame = +1
Query: 169 MSILQKGDSVQIREVWNDNLEEEFALIREIVDDFSYVAMDTEFPGVVLRPLGNFKNINDY 348
MS+ K DS+QIREVWNDNL+EE LIR++VDDF YVAMDTEFPG+V+RP+G FK+ DY
Sbjct: 1 MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60
Query: 349 NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTETPCIWQFNFREFNVSEDIFASDSIEL 528
+Y+TLK NV++LK+IQLGLTFS+E GNLPTCGT+ CIWQFNFREF++ DIFA DSIEL
Sbjct: 61 HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120
Query: 529 LRQSGIDLKKINEKGID 579
L+QSGIDL K GID
Sbjct: 121 LKQSGIDLAKNTLDGID 137
>ref|NP_173044.1| BTG1 binding factor 1, putative; protein id: At1g15920.1, supported
by cDNA: gi_19347886, supported by cDNA: gi_21281270
[Arabidopsis thaliana] gi|25363303|pir||F86293 T24D18.2
protein - Arabidopsis thaliana
gi|6587798|gb|AAF18489.1|AC010924_2 Similar to gi|Q60809
CCR4-associated factor 1 (CAF1) from Mus musculus. EST
gb|Z26822 comes from this gene. [Arabidopsis thaliana]
gi|19347887|gb|AAL86000.1| putative BTG1 binding factor
1 [Arabidopsis thaliana] gi|21281271|gb|AAM45088.1|
putative BTG1 binding factor 1 [Arabidopsis thaliana]
Length = 286
Score = 183 bits (464), Expect = 2e-45
Identities = 90/139 (64%), Positives = 107/139 (76%), Gaps = 6/139 (4%)
Frame = +1
Query: 181 QKGDSVQIREVWNDNLEEEFALIREIVDDFSYVAMDTEFPGVVLRPLGNFKNIN------ 342
++ D+++IREVWN NLE+E ALI + +DDF YVAMDTEFPG+V + + N N
Sbjct: 9 EEDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHY 68
Query: 343 DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTETPCIWQFNFREFNVSEDIFASDSI 522
+YNY TLK NV+MLKLIQLGLT SDE GNLPTCGT CIWQFNFREFNV D+FA DSI
Sbjct: 69 EYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSI 128
Query: 523 ELLRQSGIDLKKINEKGID 579
ELLR+S IDL+K NE G+D
Sbjct: 129 ELLRKSAIDLEKNNECGVD 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,028,518
Number of Sequences: 1393205
Number of extensions: 9338804
Number of successful extensions: 37926
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 35219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37742
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
