Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016200A_C01 KMC016200A_c01
(729 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564367.1| expressed protein; protein id: At1g30890.1, sup... 60 3e-08
gb|AAF98195.1|AC000107_18 F17F8.24 [Arabidopsis thaliana] 60 3e-08
ref|NP_191509.1| putative protein; protein id: At3g59500.1 [Arab... 58 2e-07
emb|CAC09471.1| putative protein [Oryza sativa (indica cultivar-... 40 0.026
ref|NP_499893.1| Putative nuclear protein, nematode specific [Ca... 32 7.0
>ref|NP_564367.1| expressed protein; protein id: At1g30890.1, supported by cDNA:
251549., supported by cDNA: gi_14532657, supported by
cDNA: gi_21280942 [Arabidopsis thaliana]
gi|14532658|gb|AAK64057.1| unknown protein [Arabidopsis
thaliana] gi|21280943|gb|AAM44952.1| unknown protein
[Arabidopsis thaliana] gi|21554340|gb|AAM63447.1|
unknown [Arabidopsis thaliana]
Length = 269
Score = 60.1 bits (144), Expect = 3e-08
Identities = 27/34 (79%), Positives = 29/34 (84%)
Frame = -3
Query: 727 LFAEVRSYDSSKHHYVLLFIALAQFLFFTWLGNI 626
LFAEVRSYDSSKHHY+LLF+AL QF WLGNI
Sbjct: 230 LFAEVRSYDSSKHHYLLLFLALVQFPLLIWLGNI 263
>gb|AAF98195.1|AC000107_18 F17F8.24 [Arabidopsis thaliana]
Length = 286
Score = 60.1 bits (144), Expect = 3e-08
Identities = 27/34 (79%), Positives = 29/34 (84%)
Frame = -3
Query: 727 LFAEVRSYDSSKHHYVLLFIALAQFLFFTWLGNI 626
LFAEVRSYDSSKHHY+LLF+AL QF WLGNI
Sbjct: 247 LFAEVRSYDSSKHHYLLLFLALVQFPLLIWLGNI 280
>ref|NP_191509.1| putative protein; protein id: At3g59500.1 [Arabidopsis thaliana]
gi|11282553|pir||T49291 hypothetical protein T16L24.50 -
Arabidopsis thaliana gi|6996286|emb|CAB75447.1| putative
protein [Arabidopsis thaliana]
Length = 259
Score = 57.8 bits (138), Expect = 2e-07
Identities = 25/34 (73%), Positives = 29/34 (84%)
Frame = -3
Query: 727 LFAEVRSYDSSKHHYVLLFIALAQFLFFTWLGNI 626
LFAE RSYDSS+HHY+L+F+ALAQF WLGNI
Sbjct: 220 LFAESRSYDSSRHHYLLIFVALAQFPLLIWLGNI 253
>emb|CAC09471.1| putative protein [Oryza sativa (indica cultivar-group)]
Length = 236
Score = 40.4 bits (93), Expect = 0.026
Identities = 19/36 (52%), Positives = 26/36 (71%), Gaps = 2/36 (5%)
Frame = -3
Query: 727 LFAEVRSYD--SSKHHYVLLFIALAQFLFFTWLGNI 626
LF E+RS + S++ HY LLF+A++QF F WLG I
Sbjct: 199 LFTEMRSSERHSTRQHYFLLFLAISQFPLFFWLGKI 234
>ref|NP_499893.1| Putative nuclear protein, nematode specific [Caenorhabditis
elegans] gi|7508132|pir||T28712 hypothetical protein
T21D12.11 - Caenorhabditis elegans
gi|2315831|gb|AAC48093.1| Hypothetical protein T21D12.11
[Caenorhabditis elegans]
Length = 709
Score = 32.3 bits (72), Expect = 7.0
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 132 STL*LDWTTTI--TTLHRKG*CS*TQSTIKGTLAT*FFFFVVMVYSTESTDTKCYRSNST 305
STL ++ T+T TTL + S T +TI L+T FF V ST + +T
Sbjct: 607 STLPMEGTSTKEQTTLSTEETSSATTATIFEKLSTTLFFEETQVTSTSDFTSSPRSIETT 666
Query: 306 RIIESDSGIQLQ 341
R+IE D+ +LQ
Sbjct: 667 RVIEFDTSTELQ 678
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,259,132
Number of Sequences: 1393205
Number of extensions: 12232947
Number of successful extensions: 22112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22108
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
