Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016191A_C01 KMC016191A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC83608.1| Na+/H+ antiporter, isoform 2 [Lycopersicon escul... 62 5e-09
gb|AAM22753.1| Na+/H+ antiporter [Deschampsia antarctica] 62 5e-09
ref|NP_178079.2| sodium/hydrogen exchanger; protein id: At1g7961... 52 4e-06
gb|AAM08407.1|AF490590_1 Na+/H+ exchanger 6 [Arabidopsis thaliana] 52 4e-06
pir||D96827 protein F20B17.4 [imported] - Arabidopsis thaliana g... 52 4e-06
>emb|CAC83608.1| Na+/H+ antiporter, isoform 2 [Lycopersicon esculentum]
Length = 531
Score = 62.0 bits (149), Expect = 5e-09
Identities = 32/49 (65%), Positives = 40/49 (81%), Gaps = 4/49 (8%)
Frame = -1
Query: 586 MKLKEFHKSAGSFSALDRNYLTPFFSSQ--NEDEAEPF--TSPRSGFNG 452
MKLKEFHKS SFSALD+NYLTPFF++Q +EDE EP +S R+G++G
Sbjct: 482 MKLKEFHKSTTSFSALDKNYLTPFFTTQGGDEDEDEPIMHSSRRAGYDG 530
>gb|AAM22753.1| Na+/H+ antiporter [Deschampsia antarctica]
Length = 57
Score = 62.0 bits (149), Expect = 5e-09
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Frame = -1
Query: 586 MKLKEFHKSAGSFSALDRNYLTPFFSSQNEDEAEPF----TSPRSGFNGQ 449
MKLKEFHKS SF+ALD+NYLTPFF+SQ +DEA+ F + R GF Q
Sbjct: 8 MKLKEFHKSTTSFTALDKNYLTPFFTSQTDDEADDFGDQPQNQRRGFYDQ 57
>ref|NP_178079.2| sodium/hydrogen exchanger; protein id: At1g79610.1 [Arabidopsis
thaliana] gi|20268694|gb|AAM14051.1| unknown protein
[Arabidopsis thaliana] gi|22136726|gb|AAM91682.1|
unknown protein [Arabidopsis thaliana]
Length = 535
Score = 52.4 bits (124), Expect = 4e-06
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -1
Query: 583 KLKEFHKSAGSFSALDRNYLTPFFSSQNED 494
KL+EFHKSA SF+ LDRNYLTPFF+S N D
Sbjct: 479 KLREFHKSAASFTELDRNYLTPFFTSNNGD 508
>gb|AAM08407.1|AF490590_1 Na+/H+ exchanger 6 [Arabidopsis thaliana]
Length = 525
Score = 52.4 bits (124), Expect = 4e-06
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -1
Query: 583 KLKEFHKSAGSFSALDRNYLTPFFSSQNED 494
KL+EFHKSA SF+ LDRNYLTPFF+S N D
Sbjct: 479 KLREFHKSAASFTELDRNYLTPFFTSNNGD 508
>pir||D96827 protein F20B17.4 [imported] - Arabidopsis thaliana
gi|7715609|gb|AAF68127.1|AC010793_22 F20B17.4
[Arabidopsis thaliana]
Length = 531
Score = 52.4 bits (124), Expect = 4e-06
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -1
Query: 583 KLKEFHKSAGSFSALDRNYLTPFFSSQNED 494
KL+EFHKSA SF+ LDRNYLTPFF+S N D
Sbjct: 485 KLREFHKSAASFTELDRNYLTPFFTSNNGD 514
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,496,259
Number of Sequences: 1393205
Number of extensions: 8679399
Number of successful extensions: 18458
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18455
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
