Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016158A_C01 KMC016158A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567772.1| putative protein; protein id: At4g27390.1, supp... 91 1e-17
pir||T05763 hypothetical protein M4I22.200 - Arabidopsis thalian... 47 2e-04
>ref|NP_567772.1| putative protein; protein id: At4g27390.1, supported by cDNA:
gi_14335171, supported by cDNA: gi_14423403, supported
by cDNA: gi_15529162, supported by cDNA: gi_16974362
[Arabidopsis thaliana] gi|14335172|gb|AAK59866.1|
AT4g27390/M4I22_200 [Arabidopsis thaliana]
gi|14423404|gb|AAK62384.1|AF386939_1 putative protein
[Arabidopsis thaliana] gi|15529163|gb|AAK97676.1|
AT4g27390/M4I22_200 [Arabidopsis thaliana]
gi|16974363|gb|AAL31107.1| AT4g27390/M4I22_200
[Arabidopsis thaliana]
Length = 235
Score = 90.5 bits (223), Expect = 1e-17
Identities = 43/78 (55%), Positives = 59/78 (75%), Gaps = 3/78 (3%)
Frame = -3
Query: 541 NDFQVFKSTLNDDLQLCPYCGQPFSVVGXEFVKDSVKFSNRSTTFGQAFNNFSRSSNEKD 362
N+FQ+FKS ++D++QLCP+C QPFSVV +FVK+ VKFSN++T FGQ N FS S +K
Sbjct: 159 NEFQIFKSAMDDEVQLCPFCTQPFSVVDDKFVKEPVKFSNQTTAFGQDLNGFS-SKPKKG 217
Query: 361 SGRA---IDVEAEIMDAD 317
G + +D+EAE+ DAD
Sbjct: 218 KGSSTAVVDIEAEVTDAD 235
>pir||T05763 hypothetical protein M4I22.200 - Arabidopsis thaliana
gi|3269300|emb|CAA19733.1| putative protein [Arabidopsis
thaliana] gi|7269593|emb|CAB81389.1| putative protein
[Arabidopsis thaliana]
Length = 202
Score = 47.0 bits (110), Expect = 2e-04
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = -3
Query: 541 NDFQVFKSTLNDDLQLCPYCGQPFSVVGXEFVKDSVKFSNRSTTFGQAFNNFSRSSNEKD 362
N+FQ+FKS ++D++QLCP+C QPFS G
Sbjct: 159 NEFQIFKSAMDDEVQLCPFCTQPFSGKG-------------------------------S 187
Query: 361 SGRAIDVEAEIMDAD 317
S +D+EAE+ DAD
Sbjct: 188 STAVVDIEAEVTDAD 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,607,051
Number of Sequences: 1393205
Number of extensions: 7921386
Number of successful extensions: 18924
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18911
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
