Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016157A_C01 KMC016157A_c01
(719 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198874.1| 20S proteasome beta subunit B (PBB2); protein i... 416 e-115
gb|AAM13010.1| 20S proteasome beta subunit PBB2 [Arabidopsis tha... 414 e-115
ref|NP_566818.1| 20S proteasome beta subunit B (PBB1); protein i... 412 e-114
gb|AAM65286.1| 20S proteasome beta subunit PBB2 [Arabidopsis tha... 412 e-114
emb|CAA73621.1| multicatalytic endopeptidase [Arabidopsis thaliana] 412 e-114
>ref|NP_198874.1| 20S proteasome beta subunit B (PBB2); protein id: At5g40580.1,
supported by cDNA: 38185., supported by cDNA:
gi_20260223, supported by cDNA: gi_3421103 [Arabidopsis
thaliana] gi|25529007|pir||T51979 C 3.4.25.1 proteasome
endopeptidase complex () chain PBB2 [imported] -
Arabidopsis thaliana gi|3421104|gb|AAC32067.1| 20S
proteasome beta subunit PBB2 [Arabidopsis thaliana]
gi|9758084|dbj|BAB08528.1| 20S proteasome beta subunit
PBB2 [Arabidopsis thaliana]
Length = 274
Score = 416 bits (1068), Expect = e-115
Identities = 198/227 (87%), Positives = 215/227 (94%)
Frame = +3
Query: 15 TVDLPPKGGFSFDNCRRNAMLQKNGLKGPSFLKTGTTIVGLVFQDGVILGAYTRATEGPI 194
+VD+PPKGGFSFD C+RN ML + GLK PSFLKTGTTIVGL+F+DGVILGA TRATEGPI
Sbjct: 5 SVDIPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPI 64
Query: 195 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRIVTALTLLKR 374
VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SR+VTALTLLK+
Sbjct: 65 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKK 124
Query: 375 HLFNYQGQVSAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKES 554
HLF+YQG VSAALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFE+KYKE
Sbjct: 125 HLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEG 184
Query: 555 LTRDEGIKIVVEAICAGVFNDLGSGSNVDVCVITKGHKEYLRNYLTP 695
LTRDEGIK+V EAIC+G+FNDLGSGSNVD+CVITKGHKEYLRNY+ P
Sbjct: 185 LTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITKGHKEYLRNYMEP 231
>gb|AAM13010.1| 20S proteasome beta subunit PBB2 [Arabidopsis thaliana]
gi|21387013|gb|AAM47910.1| 20S proteasome beta subunit
PBB2 [Arabidopsis thaliana]
Length = 274
Score = 414 bits (1064), Expect = e-115
Identities = 197/227 (86%), Positives = 214/227 (93%)
Frame = +3
Query: 15 TVDLPPKGGFSFDNCRRNAMLQKNGLKGPSFLKTGTTIVGLVFQDGVILGAYTRATEGPI 194
+VD+PPKGGFSFD C+RN ML + GLK PSFLKTGTTIVGL+F+DGVILGA TRATEGPI
Sbjct: 5 SVDIPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPI 64
Query: 195 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRIVTALTLLKR 374
VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SR+VTALTLLK+
Sbjct: 65 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKK 124
Query: 375 HLFNYQGQVSAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKES 554
HLF+YQG VSAALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLA MSVFE+KYKE
Sbjct: 125 HLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAVMSVFEAKYKEG 184
Query: 555 LTRDEGIKIVVEAICAGVFNDLGSGSNVDVCVITKGHKEYLRNYLTP 695
LTRDEGIK+V EAIC+G+FNDLGSGSNVD+CVITKGHKEYLRNY+ P
Sbjct: 185 LTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITKGHKEYLRNYMEP 231
>ref|NP_566818.1| 20S proteasome beta subunit B (PBB1); protein id: At3g27430.1,
supported by cDNA: 25264., supported by cDNA: gi_3421101
[Arabidopsis thaliana] gi|25529005|pir||T51977 C
3.4.25.1 proteasome endopeptidase complex () chain PBB1
[imported] - Arabidopsis thaliana
gi|3421102|gb|AAC32066.1| 20S proteasome beta subunit
PBB1 [Arabidopsis thaliana] gi|7939516|dbj|BAA95719.1|
20S proteasome beta subunit; multicatalytic
endopeptidase [Arabidopsis thaliana]
gi|21554360|gb|AAM63467.1| 20S proteasome beta subunit
PBB1 [Arabidopsis thaliana] gi|28058828|gb|AAO29958.1|
20S proteasome beta subunit (PBB1) [Arabidopsis
thaliana]
Length = 273
Score = 412 bits (1060), Expect = e-114
Identities = 196/227 (86%), Positives = 215/227 (94%)
Frame = +3
Query: 15 TVDLPPKGGFSFDNCRRNAMLQKNGLKGPSFLKTGTTIVGLVFQDGVILGAYTRATEGPI 194
TVD+PPKGGFSFD C+RN ML + GLK PSFLKTGTTIVGL+F+DGVILGA TRATEGPI
Sbjct: 5 TVDVPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPI 64
Query: 195 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRIVTALTLLKR 374
VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SR++TALTLLK+
Sbjct: 65 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKK 124
Query: 375 HLFNYQGQVSAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKES 554
HLF+YQG VSAALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFE+KYKE
Sbjct: 125 HLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEG 184
Query: 555 LTRDEGIKIVVEAICAGVFNDLGSGSNVDVCVITKGHKEYLRNYLTP 695
LTRDEGIK+V E+IC+G+FNDLGSGSNVD+CVITKG+KEYLRNY+ P
Sbjct: 185 LTRDEGIKLVAESICSGIFNDLGSGSNVDICVITKGNKEYLRNYMEP 231
>gb|AAM65286.1| 20S proteasome beta subunit PBB2 [Arabidopsis thaliana]
Length = 274
Score = 412 bits (1059), Expect = e-114
Identities = 197/227 (86%), Positives = 214/227 (93%)
Frame = +3
Query: 15 TVDLPPKGGFSFDNCRRNAMLQKNGLKGPSFLKTGTTIVGLVFQDGVILGAYTRATEGPI 194
+VD+PPKGGFSFD C+RN ML + GLK PSFLKTGTTIVGL+F+DGVILGA TRATEGPI
Sbjct: 5 SVDIPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPI 64
Query: 195 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRIVTALTLLKR 374
VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SR+VTALTLLK+
Sbjct: 65 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKK 124
Query: 375 HLFNYQGQVSAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKES 554
LF+YQG VSAALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFE+KYKE
Sbjct: 125 XLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEG 184
Query: 555 LTRDEGIKIVVEAICAGVFNDLGSGSNVDVCVITKGHKEYLRNYLTP 695
LTRDEGIK+V EAIC+G+FNDLGSGSNVD+CVITKGHKEYLRNY+ P
Sbjct: 185 LTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITKGHKEYLRNYMEP 231
>emb|CAA73621.1| multicatalytic endopeptidase [Arabidopsis thaliana]
Length = 273
Score = 412 bits (1058), Expect = e-114
Identities = 196/227 (86%), Positives = 214/227 (93%)
Frame = +3
Query: 15 TVDLPPKGGFSFDNCRRNAMLQKNGLKGPSFLKTGTTIVGLVFQDGVILGAYTRATEGPI 194
TVD+PPKGGFSFD C+RN ML GLK PSFLKTGTTIVGL+F+DGVILGA TRATEGPI
Sbjct: 5 TVDVPPKGGFSFDLCKRNDMLTPKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPI 64
Query: 195 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRIVTALTLLKR 374
VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SR++TALTLLK+
Sbjct: 65 VADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKK 124
Query: 375 HLFNYQGQVSAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKES 554
HLF+YQG VSAALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFE+KYKE
Sbjct: 125 HLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEG 184
Query: 555 LTRDEGIKIVVEAICAGVFNDLGSGSNVDVCVITKGHKEYLRNYLTP 695
LTRDEGIK+V E+IC+G+FNDLGSGSNVD+CVITKG+KEYLRNY+ P
Sbjct: 185 LTRDEGIKLVAESICSGIFNDLGSGSNVDICVITKGNKEYLRNYMEP 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,376,596
Number of Sequences: 1393205
Number of extensions: 13550126
Number of successful extensions: 38173
Number of sequences better than 10.0: 482
Number of HSP's better than 10.0 without gapping: 36259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37830
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
